Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00539 ATGATGATATCGAGAGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAGCCGCTCACACCGGTTTCGGAGGTGTCGGAGCCGCCGGAGTCGCCGTCGCCGTACCTGGACCTCGGCGCCGAGACCTCCGCGTCGCAGCAGGTGGAGGCGGAGGAGGAGATGGAGGAGCCGGAGGAGATCGAGCCGCCGCCCGCCGCGGTTCCGTTTTCGCAGCTCTTCGCATGCGCCGACCGCTTCGATTGGTTCCTCATGGCCGTCGGTTCCGTCGCCGCCGCGGCTCACGGCACCGCGCTCGTCGTTTACTTGCACTACTTCGCGAAGATCATCCACGTGCTGCGGATGGATCCTCCGCACGGTGCGTCGCAGGAGCAGTTTGACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGCGGGAGTTTTCGTTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACGGGAGAACGGCAGACTGCTGTCATCAGGTCAAGATATGTTCAAGTACTACTTAATCAAGATATGAGTTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTAAGTGATGTGCTGCTTATCCAGTCCGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCCACGGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCCGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACTTTGGCCAAGTATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTAGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGGAAAAGCACATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCATATAGATTATATGAGATGATAAGTCGGTCATCCTCATCTGTTAATCATGATGGCACTGCCCCTGATTCTGTGCAAGGAAATATAGAGTTCCGGAATGTTTATTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACCGTGCCTGCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATCTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGCCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCTAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAAGAATGCTGACTATATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACTCTGGATGGCTTATATGCTGAGCTTCTTCGATGCGAAGAGGCAGCTAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCAGCCTTCCAAATTGAGAAGGATTCTTCAAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCCCGACCTCCAGATGGCGTCTTTAACTTGCAAGAATCACCAAAAGTCTGGAGCCCACCGCCTGAGAAGATGCTTGAAAATGGTCAGGCGTTGGATGCAACAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATGTTCAGTCTGTGCATCGACAAATGTCAAATGGTTCTGATCCAGAATCTCCCGTTTCACCTCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTAAAATGAGAGAAACAAAGGGTGCACGGCATCGAAAACCACCATCACTGCAGAAGCTGGCTGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGCTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTTGTGGTGACAGCTTACTATAGAATTGATGACACTCATCACCTAGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGGCTGCATGGGTATTGTGACAGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAAAGGGTTAGGAGAATGATGTTTTCAGCCATGCTACGCAATGAAGTGGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTGTTGTTGGTCTTCTCATTGGTGCTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCAATTCTCTGTGTTTCTGCCATTGCACAGAAATTTTGGCTTGCTGGATTTTCAAGAGGCATCCAGGAAATGCACAGAAAGGCATCCTTGGTTCTTGAAGATTCAGTTAGGAACATTTACACTGTTGTTGCTTTTTGTGCTGGTAATAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTGCTACTTTGGTACACTGCAATATGTATAAAACGGGGTTACATGGATCCACCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGACGAAAATCTCTCATGTCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATGGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATCGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCACTGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCTGGGTCAGGAAAAAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCGGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAACCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATTATATATGCAAGGCATAATGCCACAGAAGCTGAGATGAAGGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCTAGCCGAGTAGTGCAAGAGGCTCTAGACACGCTAATAATGGGAAACAAGACCACTATTTTAATAGCGCATAGGGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATTCATTGGTAGCAAAGAATGGTTTGTATGTCCGACTGATGCAACCTCATTTTGGCAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4209 0.4398 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDLGAETSASQQVEAEEEMEEPEEIEPPPAAVPFSQLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHVLRMDPPHGASQEQFDRFTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSSHSFKEPSSPKMMKSPSLQRISNVSRPPDGVFNLQESPKVWSPPPEKMLENGQALDATDKEPSIRRQDSFEMRLPELPKIDVQSVHRQMSNGSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDVSVKMRETKGARHRKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTHHLEREVDRWCLIIGCMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVVVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDSVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLMSVFEIIDRVPKIDPDDGSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVTGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00539 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Pumo5g00539 1402 Gene3D ABC transporter type 1, transmembrane domain 70 659 IPR036640 GO:0005524|GO:0016020
Pumo5g00539 1402 Gene3D ABC transporter type 1, transmembrane domain 769 997 IPR036640 GO:0005524|GO:0016020
Pumo5g00539 1402 MobiDBLite consensus disorder prediction 755 812 - -
Pumo5g00539 1402 Pfam ABC transporter 1171 1319 IPR003439 GO:0005524
Pumo5g00539 1402 FunFam ABC transporter B family member 20 1143 1392 - -
Pumo5g00539 1402 SUPERFAMILY ABC transporter transmembrane region 817 1138 IPR036640 GO:0005524|GO:0016020
Pumo5g00539 1402 FunFam ABC transporter B family member 6 770 998 - -
Pumo5g00539 1402 FunFam ABC transporter B family member 6 1000 1150 - -
Pumo5g00539 1402 MobiDBLite consensus disorder prediction 755 781 - -
Pumo5g00539 1402 Coils Coil 253 273 - -
Pumo5g00539 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 830 1122 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g00539 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Pumo5g00539 1402 MobiDBLite consensus disorder prediction 782 812 - -
Pumo5g00539 1402 Pfam ABC transporter transmembrane region 835 1099 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g00539 1402 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g00539 1402 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Pumo5g00539 1402 CDD ABC_6TM_Pgp_ABCB1_D2_like 825 1136 - -
Pumo5g00539 1402 SMART AAA_5 1180 1367 IPR003593 GO:0016887
Pumo5g00539 1402 SMART AAA_5 434 760 IPR003593 GO:0016887
Pumo5g00539 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1153 1390 IPR003439 GO:0005524
Pumo5g00539 1402 MobiDBLite consensus disorder prediction 675 700 - -
Pumo5g00539 1402 MobiDBLite consensus disorder prediction 666 732 - -
Pumo5g00539 1402 FunFam ABC transporter B family member 20 397 644 - -
Pumo5g00539 1402 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Pumo5g00539 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo5g00539 1402 PANTHER ABC TRANSPORTER B FAMILY 46 876 IPR039421 -
Pumo5g00539 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1389 IPR027417 -
Pumo5g00539 1402 FunFam ABC transporter B family member 20 70 409 - -
Pumo5g00539 1402 Gene3D ABC transporter type 1, transmembrane domain 1054 1142 IPR036640 GO:0005524|GO:0016020
Pumo5g00539 1402 MobiDBLite consensus disorder prediction 18 60 - -
Pumo5g00539 1402 Gene3D - 397 644 IPR027417 -
Pumo5g00539 1402 Gene3D - 1143 1390 IPR027417 -
Pumo5g00539 1402 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00539 Pumo-Chr5 11091407 11099742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00539 53 698 Calmodulin-binding Proteins AT2G36910 43.252 4.40e-165 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00539 K05658 - gmx:100789116 2605.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00539 5 11091407 11099742 Pumo5g00539 5 11091407 11099742 ECH