Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00538 ATGACAATGTATAGAATTGCAATTGGGACCCCTGGAGAGGCTGGCCAACCTGATGCAATTAGAGCAGCGTTTGCAGAATTCTTCTCCATGATCATTTTTGTTTTTGCTGGGGAAGGATCTGGCATGGCTTACAGCAAACTTACCAACAATGGACCTGCAACACCATCTGGTCTCATAGCTGCATCACTATCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGTCAAACATTTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCATTGGAGGAAACATAACCCTCTTGAGAAGTATTTTGTATTGGATTGCACAGTTGCTTGGTTCAGTTGTTGCGTGCATTCTTCTCAAGTCTGCAACCGGTGGAATGGAAACATCAGGCTTTTCTCTATCCCCTGGTGTGTCTGTCTGGAATGCATTGGTTTTTGAAATAGTGATGACTTTTGGGTTGGTATATACAGTTTATGCCACAGCAGTGGACCCAAAGAAAGGGAATGTGGGAGTTGTTGCCCCAATTGCAATTGGTTTCATTGTGGGTGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCCATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACATGGTCATGGACTCATCACTGGGTCTATTGGGTTGGTCCATTCATTGGTGCAGCAATTGCTGCAATTATCTATGATAATATCTTCATTGGAGATGATGGTCATGAACCTCTTTCAAGCAGTGACTTCTAG 759 0.4466 MTMYRIAIGTPGEAGQPDAIRAAFAEFFSMIIFVFAGEGSGMAYSKLTNNGPATPSGLIAASLSHAFGLFVAVSVGSNISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSGFSLSPGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNVGVVAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00538 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Pumo5g00538 252 SUPERFAMILY Aquaporin-like 17 240 IPR023271 -
Pumo5g00538 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo5g00538 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Pumo5g00538 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Pumo5g00538 252 FunFam Probable aquaporin TIP1-1 4 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00538 Pumo-Chr5 11087020 11088523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00538 1 252 Major Intrinsic Protein MIP AT4G01470 83.730 2.18e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00538 K09873 - gmx:100788583 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00538 5 11087020 11088523 Pumo5g00538 5 11087020 11088523 ECH