Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00535 ATGGCTGATGCAATTGTGAACTTCCTGGCAGAGAAGCTGACGAGGCTGCTTGCGGATGAAGCCAAACTTATCAGCGGCGTGCACGACAAAGTGACGTCGTTGCGCAGCGAGCTCAGGTTCATGAACGTGTTCCTCAACAACACCCAAGGGAAGCGGAAAGAGCACGACGTGGTGGCAGAGGTGGCGAGCCAGATCAGAGACGTTGCCCACGAAGCCGAAGATGTCATCGACACTTACGTCGCCGACATGATCAAACAGGGAAGGATGAACATGCTCGAGAAGATGGTTGCCCACGGTGTAGACCACGCGCTCATGCTTCGCAACGTGGCAGTCAAGATAGACACCATCAAGACCAGAATCAACGACATCTTCGACAACAGAGACAAATACGGCATCACCGAAGGTGGAAGAAGAGACAGAGGAGAAGCAGAGCGCATACGGAGGCAGAGGAGTGAGGTGGAGGAAGAACAGGTGGTGGGGTTTGAGAGTTACTCCAGGGTTGTAATTGACCAACTTATGGGAACTGGTTCGCGCCTTGACGTTGTTTCCATCGTCGGTATGGGTGGTTTGGGAAAGACCACTCTTGCTAGAAAAATATATGACAACGTTAGGGTCAAGAACATGTTTCCTTGTCGCGCGTGGGGTTATGTTTCTAATGAATATCGACCCAGGGAGTTTTTCTCAAGCCTTCTCAAGTGTTTGCTGTCCCCGGCTGAATATAATGATGAATTCAAAAGAAGGGAAGGCAAGGAAGAATTGAAGATGAAGGTGCGAGAATGTTTGAATACAAGTGGCAAGTACTTGGTGGTGGTGGACGATGTTTGGCAAATCCAGGTGTGGGATGAGATTAAGGGCGCTTTTCCTGATGATCACAATGGAAGCAGAATATTGATCACTACTCGTTTGGTTGAGGTGGCTTCTCACACGGGTGCAAACCCTCCCTACTCACTTCCCTTCCTCAATAAACAGAAAAGTTGGGAACTACTTTTCAAGAAGGTGTTTCAGGGACAAAAGTGTCCTTCTGATTTAGAATCTCTGGGAAGATTGATTGCTGAAAACTGTGATGGCTTGCCACTTGCCATCATCGTCATGGCGGGGATTCTGGCAAACAAGAAATCACCGAGGGAATGGTCTGGAATCAAGGACCATATGAATTGGCATCTTGGGAGGAACAAGGACAACATACTCAAGGATATACTGAAACTCAGCTATGACACCTTGCCTACGAGGTTAAAGCCTTGTTTTCTATATTTTGGCATGTACCCTGAAGACTCTAGGATCCCCGTGAAGCAATTGATCCAGTTGTGGATATCTGAAGGGTTATTAACACAAGAAACTACTTCCGGAAGCACAAGCGCACCAGAGCCAGAATATATTGCGGAAGCGTACTTGGGTGAACTAGTGGATCGAAGCTTGGTCCAAGTCGTTAATAGGACCAGCGATGGGAGTGTCAAAACATGTCGGATTCACAACGTTCTCCGCCACTTCTGCATATCCGAGAGCAGGGACGACAAGTTTTTCCAGGTTTGCGGAAAGATTAATGATGTTCAAACGCACAGTCGTAGGTTGTCCCTCCAAGGTACACTATTTCATTTCTCTTCAAGCTTATCTGGTTCCTCCATTTGGGGCACGCGCTCCCTCTTATGCTTCGGCGAAGAGGTGTCCGAGGTTAAGCCAGACCACTGGACGTGGCTTCTCAAGAGTTTCAAGTTGGCTCGGGTGTTAGATCTTGGAAAAATGAATGTTAACTCACTACCCGGTGATTTGAAGAAACTCATCCATCTAAGGTACTTGAGAATACACTCACAGAATCTCGAAACTGTTCCAGTTTCAATATGCAGGCTATGGAATCTAGAAACCCTGGACCTAAGGGGTTCGCCTATAAAATCCTTATCAGGTGAACTCTGGCAGCTTAAGCAACTAAGGAATCTTCTGATGGTTGGACCCGTGGGGCTCCCAAACATGCCATCAGAAAGTGAAACCATGCAGAATCTCCAAACTCTCTCTACCGTGGCTCTTGATCTGCAGACAGCGTCGTTGTTGGAGAATGGTAGATTCCCCGGGTTGAAAAAATTGGGTTTACATTATGAAAATCGTGACATGTGTAATCCTCGTGTGCAGTTACAAAGCCTCCACCACCTAAGCCATCTCCGGAAGCTAAAACTGATTGGCACTACTGAGATTCCGCAAAATGCAGCAGATGTGTTTCCCTCAACCATCACCAAGATAACCGTTACAAAGTTTGCTTTCTTCAACTCTAGTGCAATGAACACACTTGGAAAGCTTCCAAACCTGCAGGTTCTGAAATTGTCATCGCAGAAAAATACTGCTAGTTTTGACGTGCATTATGCCACGGGAGGGTTCCCACAGCTACAGGTGTTTGTGATGGTTGGAATCAAAGTCAAAAGCTGGAGAGTATACAAAGGTTCAATGCCACGTGTTCGACGTGTAGTTGTCAGAAACTGCAAATACTTGACTGAGCTTCCAAAACAACTTTGGTCTTTGACTACCTTGTCCGAAGTGAATGTTTCGTGGCCCTCTACAGAATTGGCAAATACACTCCAAAATTTGGAGGTGAAGAATAAGAGTAAGCTCGTGGTTTATCCTCTCTCAACCAAATGA 2622 0.4668 MADAIVNFLAEKLTRLLADEAKLISGVHDKVTSLRSELRFMNVFLNNTQGKRKEHDVVAEVASQIRDVAHEAEDVIDTYVADMIKQGRMNMLEKMVAHGVDHALMLRNVAVKIDTIKTRINDIFDNRDKYGITEGGRRDRGEAERIRRQRSEVEEEQVVGFESYSRVVIDQLMGTGSRLDVVSIVGMGGLGKTTLARKIYDNVRVKNMFPCRAWGYVSNEYRPREFFSSLLKCLLSPAEYNDEFKRREGKEELKMKVRECLNTSGKYLVVVDDVWQIQVWDEIKGAFPDDHNGSRILITTRLVEVASHTGANPPYSLPFLNKQKSWELLFKKVFQGQKCPSDLESLGRLIAENCDGLPLAIIVMAGILANKKSPREWSGIKDHMNWHLGRNKDNILKDILKLSYDTLPTRLKPCFLYFGMYPEDSRIPVKQLIQLWISEGLLTQETTSGSTSAPEPEYIAEAYLGELVDRSLVQVVNRTSDGSVKTCRIHNVLRHFCISESRDDKFFQVCGKINDVQTHSRRLSLQGTLFHFSSSLSGSSIWGTRSLLCFGEEVSEVKPDHWTWLLKSFKLARVLDLGKMNVNSLPGDLKKLIHLRYLRIHSQNLETVPVSICRLWNLETLDLRGSPIKSLSGELWQLKQLRNLLMVGPVGLPNMPSESETMQNLQTLSTVALDLQTASLLENGRFPGLKKLGLHYENRDMCNPRVQLQSLHHLSHLRKLKLIGTTEIPQNAADVFPSTITKITVTKFAFFNSSAMNTLGKLPNLQVLKLSSQKNTASFDVHYATGGFPQLQVFVMVGIKVKSWRVYKGSMPRVRRVVVRNCKYLTELPKQLWSLTTLSEVNVSWPSTELANTLQNLEVKNKSKLVVYPLSTK 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00535 873 Gene3D - 141 313 IPR027417 -
Pumo5g00535 873 PANTHER DISEASE RESISTANCE PROTEIN RP 33 796 IPR044974 GO:0006952
Pumo5g00535 873 FunFam Probable disease resistance protein At1g61300 141 314 - -
Pumo5g00535 873 SUPERFAMILY L domain-like 495 845 - -
Pumo5g00535 873 Gene3D - 5 121 - -
Pumo5g00535 873 Pfam Rx N-terminal domain 5 87 IPR041118 -
Pumo5g00535 873 Pfam NB-ARC domain 167 405 IPR002182 GO:0043531
Pumo5g00535 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 418 IPR027417 -
Pumo5g00535 873 Gene3D - 409 499 IPR036388 -
Pumo5g00535 873 FunFam Probable disease resistance protein At1g63360 404 499 - -
Pumo5g00535 873 Gene3D Ribonuclease Inhibitor 544 869 IPR032675 -
Pumo5g00535 873 Gene3D - 319 408 IPR042197 -
Pumo5g00535 873 CDD RX-CC_like 2 125 IPR038005 -
Pumo5g00535 873 PRINTS Disease resistance protein signature 760 776 - -
Pumo5g00535 873 PRINTS Disease resistance protein signature 181 196 - -
Pumo5g00535 873 PRINTS Disease resistance protein signature 261 275 - -
Pumo5g00535 873 PRINTS Disease resistance protein signature 354 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00535 Pumo-Chr5 11017682 11020596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00535 164 421 WRKY Transcription Factor Family AT5G45050 26.592 3.67e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00535 - - gmx:100780593 1206.05