Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00533 ATGAAGAGAGAAAGAGAGGTTGATAGCTTAACCATGGCGAATTGTTTGATGTTGCTTTCTCGTGGTGGAGGTGAATTTGAGGCCACCTACTCAAGCTCTTCTATGAGCAACCGTGTCTTTGAATGCAAGACATGTAATAGGCAATTCCCTTCATTTCAGGCACTTGGTGGCCACAGGGCTAGTCACAAGAAGCCTAGGTTGATGGCAGGAGATATTGAAGGCCAATTGCTTCATGATTCACCCCCAAAGCCTAAGACTCATGAGTGTTCCATTTGTGGGTTGGAGTTTGCCATAGGGCAAGCCTTGGGAGGCCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACGTGCACAATTCTACGACGATGAGTAGTAGTAGTGGTGGTAGCAGTTTCGATTCTTCACCGAAGAAGAAAGCTGGCGACAAGAGAGTTTTGGTTTTGGACTTGAATCTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTACTTTGGTTGATTATTTGTATTGA 531 0.4463 MKREREVDSLTMANCLMLLSRGGGEFEATYSSSSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGDIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNVHNSTTMSSSSGGSSFDSSPKKKAGDKRVLVLDLNLTPFENDLEFLKIGKPTTLVDYLY 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00533 176 MobiDBLite consensus disorder prediction 116 135 - -
Pumo5g00533 176 Pfam C2H2-type zinc finger 87 111 - -
Pumo5g00533 176 Pfam C2H2-type zinc finger 39 65 - -
Pumo5g00533 176 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Pumo5g00533 176 PANTHER ZINC FINGER PROTEIN ZAT5 5 158 - -
Pumo5g00533 176 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Pumo5g00533 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Pumo5g00533 176 Gene3D Classic Zinc Finger 37 109 - -
Pumo5g00533 176 MobiDBLite consensus disorder prediction 116 139 - -
Pumo5g00533 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Pumo5g00533 176 SMART c2h2final6 87 109 IPR013087 -
Pumo5g00533 176 SMART c2h2final6 40 62 IPR013087 -
Pumo5g00533 176 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00533 Pumo-Chr5 10995079 10995982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00533 1 163 C2H2 Transcription Factor Family AT2G37430 43.605 1.77e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo5g00533 zf-C2H2_6 8.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00533 - - gmx:100781134 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00533 5 10995079 10995982 Pumo5g00533 5 10995079 10995982 ECH