Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00532 ATGTCTTATCAGCATAAAAGCTTTTGGACACCACGGGATGCTGGCTGCATGGCTGAAGAAAATGTAGGATATGAAAATTCTTCCAGGATTGAACCCAAGCGTAGTCATCAGTGGTTTATGGATACAGGTGAACCTGAAATATTCAGCAACAAGAAACAAGCAGTTGAAGCTGTTAGTGGCAGGCCAATTTCAGGAGTTTCACATGTGAATGTTTCCCAATGGGACACCAATTCAGGATTTCACTCAGTCACAGGTCAATTTTCTGACCGTCTTTTTGGATCTGATCTTTCTAGGACTGTGAATTTGGTTGATAAGAACATGCCATCTATTGTAAGTGGAAATCTGAACATGGGAAGGAAGGATTTTGAGCATCAATATAGTAATGATCCTTCTGTGGGATTGTCAATGTCTCATTCCATAGCAGACCCTTCATCTTGTCTCAATTTTGGTGGCATCAGAAAAGTTAAAGTTAATCAAGTCAGAGATTCTGACAACTGCATGCCTGCTGCATCCATGGGGCACTCCTATAGTAGGGAAGATAATAGTACAATTTCAGTAGGTGCTGGCTACAATAAGAATGATGGCAATATTTCGTTGGGTCCTACTTATAACAATGGAAATGACAACACCATTGCTATGGGGACCAGAATGAGTAAGACTGATGACAATCTTCTTTCAATGGCTCACACCTTCAATAAAGGGGATGGGGGTTTTATGTTGATGGGCCACAATTATGGCAAGGGAGATGAAAGTATCTTATCAATGGGTCAGCCCTTTGACAAGGGAGATGGAAATTTCATATCAATGGGTCAATCATATGAGAAGGAAGATGGCAACTTAATATCTCTGGGCACCTCATATACCAAGGGGCATGAGAGCTTTATATCAGTTGGTCCAACCTATGGTAAATCAGGGGAAAATTTCATAACTGTTGCTCCTTATGACAAGGGTACTGATCATATAATATCAATGGGTCCAACATATGATAAGGCGGATCCAAATATTGCATCAACAGTTCCATCATATGACAGAGGAGATTCTAGTTCTTTACCTGTGGGTCAAAACCACCATAAGGGCCAGAGCAGTACCATATCTTTTGGAGGTTTTCATGATGACCATGAACCAAATCCCTCTGGTGGAGTCATTAGTAGCTATGATCTGTTGATAGGAAGCCAGAACACAGCTCAAGGTTTGGATAGCCAGAATGATCTGACTGAGTCGAACACTGAATCACTTGTAAATAGCATTCCAAAACCCAATACTAAAAATGATATTGTTAAGAACAAAGAGCCAAAGACAACCAAGAAGGCTCCTACTAACAACTTCCCTTCAAATGTCAAAAGTTTGTTGTCAACTGGTATTTTTGATGGTGTTCAGGTGAAATATGTTTCATGGTCACGGGAGAAAAGTCTTAAAGGAATCATAAAAGGAACTGGGTATTTGTGTTCATGTGATGACTGCAAGCAGTCAAAGGCTCTTAATGCATATGAGTTTGAGCGTCATGCTGGTGCCAAGACAAAACACCCTAACAATCACATATACTTTGAGAATGGAAAAACCATCTATGCTGTTGTTCAAGAGCTGAAAAACACTCCTCAGGATATGCTTTTTGATGCAATTCAAAATGTGACTGGCTCTACCATCAACCAAAAGAACTTTCGAATATGGAAAGCATCATACCAAGCTGCTACTCGGGAGCTTCAGCGTATCTATGGAAAGGATGAAGTGGTCATTCCGTCTTGA 1743 0.405 MSYQHKSFWTPRDAGCMAEENVGYENSSRIEPKRSHQWFMDTGEPEIFSNKKQAVEAVSGRPISGVSHVNVSQWDTNSGFHSVTGQFSDRLFGSDLSRTVNLVDKNMPSIVSGNLNMGRKDFEHQYSNDPSVGLSMSHSIADPSSCLNFGGIRKVKVNQVRDSDNCMPAASMGHSYSREDNSTISVGAGYNKNDGNISLGPTYNNGNDNTIAMGTRMSKTDDNLLSMAHTFNKGDGGFMLMGHNYGKGDESILSMGQPFDKGDGNFISMGQSYEKEDGNLISLGTSYTKGHESFISVGPTYGKSGENFITVAPYDKGTDHIISMGPTYDKADPNIASTVPSYDRGDSSSLPVGQNHHKGQSSTISFGGFHDDHEPNPSGGVISSYDLLIGSQNTAQGLDSQNDLTESNTESLVNSIPKPNTKNDIVKNKEPKTTKKAPTNNFPSNVKSLLSTGIFDGVQVKYVSWSREKSLKGIIKGTGYLCSCDDCKQSKALNAYEFERHAGAKTKHPNNHIYFENGKTIYAVVQELKNTPQDMLFDAIQNVTGSTINQKNFRIWKASYQAATRELQRIYGKDEVVIPS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00532 580 SUPERFAMILY Porins 176 349 - -
Pumo5g00532 580 MobiDBLite consensus disorder prediction 340 367 - -
Pumo5g00532 580 MobiDBLite consensus disorder prediction 332 383 - -
Pumo5g00532 580 MobiDBLite consensus disorder prediction 410 442 - -
Pumo5g00532 580 PANTHER AUTOIMMUNE REGULATOR 8 529 - -
Pumo5g00532 580 Pfam Tify domain binding domain 473 528 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00532 Pumo-Chr5 10984180 10988937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00532 432 561 PHD Transcription Factor Family AT3G53680 56.154 7.27e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00532 - - gmx:100782217 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00532 5 10984180 10988937 Pumo5g00532 5 10984180 10988937 ECH
Pumo3g02579 3 38907910 38911522 Pumo5g00532 5 10984180 10988937 ECH