Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00523 ATGTCAGAAGCTAGTCCTTATTCCATTGATGTTGCAAAAATGAGAAATGCTCTTCTATCATCAGTTTCTTCAAGGCTTCACTGCTATGGTAATAATAACTTCAAAGCTATTAATTGCAAACGTTTTAAATATCTAAACTTAGTCACCAAGCTTTTGCTGATTTTTTTGGTAATTCAGGAAACGAATGAGGCTCAGTTTGAAATTTTAGAGGGCTCCATGCAGATGAACGATCTAACTGACTTCTATAGCAATGGCTTCAACATGGAGTCTAGAATATTCAACAATGACAGCCAATTGGGTCAAGGAGTCCATACACAGCCTAGCCAGTCTCAGTCTCTGATTTATGACTACAACCATTACCCAGGTAGTCTCTATGCCATCCCAAGCAGCAAAGACATTTCTCAGCAATCATTGTTACTTGACAAAGACACTTCTCAATATGAAGGAGTATGTGGAAGTGGAAATGCCAGAAAGCGTCCATTTGAGTACACTGACAACATGTCCTTGTGGAAAAAAATGAAAAGCAATTCCAAAAGCAATATTACAATCATGGAACCGAAATGGCATCAAGCAAAAGAAGATTCAGAGATAATCCCTCCGCACAAATCGCATGTGCCTATGAGGACGAATCAGAAGCTTAGCGATAAAATTACAACTCTACAAAAGTTGGTTTCACCTTTTGGCAAGACTGACACCGCATCAGTTCTTCATGAGGCTTCTCTTTATATCAAGCTTCTTCAAGCACAAATCCGGACTTTGTTTCAGATGTTGAGCTTCTCTTACTTTAGTACGATTAAAGATCCCCACACTCAGGAATGTGGGGACAAATTGCAGGTTGACCTAAGGAGCAGAGGACTATGCTTGGTTCCCGTATCAATCACAGAGAAAGTAACAATGGTAGACCAGATTCATCATGCTTCAGCCTCAAGAATTATTCACTCCCGAAATTTCTAA 954 0.3952 MSEASPYSIDVAKMRNALLSSVSSRLHCYGNNNFKAINCKRFKYLNLVTKLLLIFLVIQETNEAQFEILEGSMQMNDLTDFYSNGFNMESRIFNNDSQLGQGVHTQPSQSQSLIYDYNHYPGSLYAIPSSKDISQQSLLLDKDTSQYEGVCGSGNARKRPFEYTDNMSLWKKMKSNSKSNITIMEPKWHQAKEDSEIIPPHKSHVPMRTNQKLSDKITTLQKLVSPFGKTDTASVLHEASLYIKLLQAQIRTLFQMLSFSYFSTIKDPHTQECGDKLQVDLRSRGLCLVPVSITEKVTMVDQIHHASASRIIHSRNF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00523 317 CDD bHLH_AtbHLH_like 211 253 IPR045239 -
Pumo5g00523 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 119 295 - -
Pumo5g00523 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 257 IPR036638 GO:0046983
Pumo5g00523 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00523 Pumo-Chr5 10776641 10779645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00523 211 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 51.648 7.45e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00523 - - ccaj:109812405 429.869