Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00522 ATGGTGAACGTGATGGAGTGGCAGAAGCAGCGTTGGCAACCGAACGGGAACGCGGAAATGATGTACGTGAAAGTGATGACCGACGAACAACTCGAGACTCTGCGCAAACAGATTGCGGTTTACGCAACCATCTGCGAACAACTCATCGAGATGCACAAAACCATCTCTGCTCACCAAGATCTCGCAGGGATTAGGCTGGGGAATATGTATTGTGATCCATTGTTGGGGTCTGGTGGGCACAAAATAGCTTCAAGGCAGCGCTGGACTCCAACTGCTATGCAGCTTCAGATTCTGGAGCGGATATTTGATCAGGGGACTGGGACTCCCACCAAGGAAAAGATCAAGGAGATCACCACTGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTGTATAATTGGTTCCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAATGTGGCGCCTAGTGTTAATGCTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACTAAGCCGGACGAATTTCAGTCCCCACCTAGTGTTTCTGCGGGGCCTGCTGATAATGTAGGCTTCCAGAACCATGATAATTTGCAGTACTTGAATCCAGAGTCCAACAAACCAGATTCTGTGTTTCCGTCTGATGGGAGTTTAAGAGCCACTAGAAATTTCAACCATGTGCCTGTTTTTGATGGGCTGCTATCGAACTCAAGTATGTACCTTCTTGTCCTTTCTTCCTGTACTTGTCTTTATATTAGTCAAGTAAAGGTAATATTAGTGTTCTCTAATGTTACAAGTTGGAAGTGA 807 0.4672 MVNVMEWQKQRWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTISAHQDLAGIRLGNMYCDPLLGSGGHKIASRQRWTPTAMQLQILERIFDQGTGTPTKEKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQQNVAPSVNAESEVETEVDSKDKKTKPDEFQSPPSVSAGPADNVGFQNHDNLQYLNPESNKPDSVFPSDGSLRATRNFNHVPVFDGLLSNSSMYLLVLSSCTCLYISQVKVILVFSNVTSWK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00522 268 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Pumo5g00522 268 Gene3D - 86 151 - -
Pumo5g00522 268 SMART HOX_1 83 150 IPR001356 GO:0003677
Pumo5g00522 268 MobiDBLite consensus disorder prediction 143 214 - -
Pumo5g00522 268 MobiDBLite consensus disorder prediction 160 175 - -
Pumo5g00522 268 CDD homeodomain 85 147 IPR001356 GO:0003677
Pumo5g00522 268 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 236 IPR044559 GO:0003700
Pumo5g00522 268 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Pumo5g00522 268 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Pumo5g00522 268 MobiDBLite consensus disorder prediction 176 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00522 Pumo-Chr5 10772999 10775329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00522 4 192 Wox Gene Family AT4G35550 57.895 1.00e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo5g00522 Homeodomain 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00522 - - gmx:100784355 445.662