Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00518 ATGGCTGGCGGCATCGACATGTCCCTCGACGACATTATGAAACGCTCCGCCTCCGCCGCCGCCGCTGCGGCTGCTCGCCGCCGATTCACGGTTGCTCGCAACCCGGCCAGAACGACGCCGTACCCCATCCCGCAGGTAAGGCAACAGAGCATGATGATTCCATTTCCAGAAATGGTTTTGGAGGACTCAGGTGCGGCTAAGATTGAAAGTGGCACCAAACTCTATATATCTAACTTGGACCATGGAGTTTCCAACGATGATATCAAGCTGCTGTTCTTGGAAGAGGGTGAACTGAAAAGATACTCCATTCATTATGACCAGAGTGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCGTGAGGCACTCTGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACAAGTTCGGTTACTCCTGCAGTCGCGCCTCTTTGTCAAAATAACTTACTGGGAAGACCAAATGATGTCCATTTAAGCAAACGAGTAAGGGTTGGAGGTAGCGGGTTCCACAATGAGTTTGCACAGGGCCACCTTCCATGGGGCCGTGGAGAAGAGAAGGGCCATATTCGAAAGGTATCTTTTAGAGATCTTGATCATACCTTTGAGAGGTTTCACCGCATTCAGAGAGGCCACGCAAAATTAAAGGGCAATATTGGAAAGGTGACTGCTAAAGATCTTGACGATGACTTGGAGAGGTATCACTTAGAGGCTAAGCGGATTAAAAAACAAAATGGAAAGTGA 786 0.4796 MAGGIDMSLDDIMKRSASAAAAAAARRRFTVARNPARTTPYPIPQVRQQSMMIPFPEMVLEDSGAAKIESGTKLYISNLDHGVSNDDIKLLFLEEGELKRYSIHYDQSGRSKGTAEVVFVRHSDALAAIKKYNNMRLDGKPLQIELVGTSSVTPAVAPLCQNNLLGRPNDVHLSKRVRVGGSGFHNEFAQGHLPWGRGEEKGHIRKVSFRDLDHTFERFHRIQRGHAKLKGNIGKVTAKDLDDDLERYHLEAKRIKKQNGK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00518 261 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 252 - -
Pumo5g00518 261 CDD RRM_THOC4 72 146 - -
Pumo5g00518 261 SMART rrm1_1 73 145 IPR000504 GO:0003723
Pumo5g00518 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Pumo5g00518 261 Gene3D - 60 211 IPR012677 -
Pumo5g00518 261 Coils Coil 238 258 - -
Pumo5g00518 261 SUPERFAMILY RNA-binding domain, RBD 67 148 IPR035979 GO:0003676
Pumo5g00518 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00518 Pumo-Chr5 10748145 10751723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00518 71 146 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.95e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00518 K12881 - gmx:100785926 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00518 5 10748145 10751723 Pumo5g00518 5 10748145 10751723 ECH