Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00508 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACGCAACTGGTCACAACAGCAACCTAATCAGCCAGCAGGAATTGGCACCCAGAATCCACAGATTCCACCACCTCCGCAGCCACCACCTTCATCGGTGGCGGCTGGTATGGGAGGTGGTGGTTTTCAAGGCTCTATCAGATCAGGATCGATGGCTGATAGAGCCAGGATGGCTAAGATACACCAACCCGATGCATCACTCAAATGTCCACGATGTGAATCTACCAACACCAAGTTTTGCTACTACAACAACTACAACCTCTCACAGCCTCGCCACTTTTGCAAGACTTGCCGTCGTTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCAGTTGGAGGTGGCTGTAGAAGGAACAAAAGAAACAAAGGGAACAGTGCTAGATCAAAGTCTCCTATGAAACCTTCAACAGGTTCTACCTCAGCAAGTGCTAATTCTAATTCTAGTGGCTGCACCACTGATCATGTGATGATGACTCATTTGCCAACTCCAACACCAACTCAATTCCCATTCTTGGCCTCTTTGCATCACTATAATAGTGACTACGTTTCTGGGGGCATAGGATCTTATTTTGGGGCGATCACAACACCTTTGGTGGCTAGAAATGGCAACACTAGTGATGTTGAGTTTCAAATTGGTACTAGTTCAGCTTCATCACTTGGTAATAGTGGTGGGGCTATGTTGTCAAATGGCCTTGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAACATCAGTTCCCTTTCTTGAGTACTAATTTGGAGCCACAAATTGGGGTGTTTCAGTTTGGTGGTGGAGAAAATAATAATGCTGAACCACCAAGTTATGCAAAGGATATCGGAGGCCGGTTTAATATTCGTTCTAAAATGGATTCTATTTCTAGTGTAAGTGGAATAATGCCTCAGCTTAGCACAATAAAACTGGAAGAAAATCAAGGTTTGAGTCTGCCAAAAAATCTCTTGATGAGTAGTTCGGGAAGTGATGTACTTTGGAATGGAAGTAGTGGCAATGCATGGAGTGAAGTTCCTAGTTTCACTCCTTCACATAATCACTTGTTGTGA 1098 0.4481 MVFPSLPIYLDPRNWSQQQPNQPAGIGTQNPQIPPPPQPPPSSVAAGMGGGGFQGSIRSGSMADRARMAKIHQPDASLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGNSARSKSPMKPSTGSTSASANSNSSGCTTDHVMMTHLPTPTPTQFPFLASLHHYNSDYVSGGIGSYFGAITTPLVARNGNTSDVEFQIGTSSASSLGNSGGAMLSNGLGEQWRLNNLQQVQHQFPFLSTNLEPQIGVFQFGGGENNNAEPPSYAKDIGGRFNIRSKMDSISSVSGIMPQLSTIKLEENQGLSLPKNLLMSSSGSDVLWNGSSGNAWSEVPSFTPSHNHLL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00508 365 MobiDBLite consensus disorder prediction 11 63 - -
Pumo5g00508 365 Pfam Dof domain, zinc finger 76 132 IPR003851 GO:0003677|GO:0006355
Pumo5g00508 365 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Pumo5g00508 365 MobiDBLite consensus disorder prediction 29 43 - -
Pumo5g00508 365 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Pumo5g00508 365 MobiDBLite consensus disorder prediction 122 165 - -
Pumo5g00508 365 MobiDBLite consensus disorder prediction 11 28 - -
Pumo5g00508 365 MobiDBLite consensus disorder prediction 139 165 - -
Pumo5g00508 365 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 229 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00508 Pumo-Chr5 10567680 10569716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00508 1 134 C2C2-Dof Transcription Factor Family AT2G37590 60.690 2.05e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pumo5g00508 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00508 - - gmx:102662809 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00508 5 10567680 10569716 Pumo5g00508 5 10567680 10569716 ECH