Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00483 ATGGTTGAGCAAATCATGTCATCTCCTAATATATTGGTACAGTGTCGAATATGCCACGATGAGGATGAAGAGTCAAACATGGACACACCCTGTTCTTGTTGTGGCACATTGAAGTATGCACACCAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACCTGTGAAATTTGCCAACAGCAACTTAAGCCTGGCTATACTGCACCTCCATTGCCTCCTCTGTTACATTATGGTGGTTCTCCAATAAATTTTGGAGGGAACTGGGAGATTTCAAGAAGGGATCTTCATAACCATCAGTTCATAGCGATGTTTAATGGCGCTAATCGTGAATTCCTAGACCTTGACTTTGAATATTCATTGGCACCTTCTACAAGAAGCTTGATATTTTGCCGCATTATTGCCATTATTTTTATTGTTCTTCTTCTTTTACGCCATACACTTCCAATCATACTTATACTCAGTGGAGCAAGAGCATATTCATTGGCAGTATTTATGTTAATAGTATTGAGAATCATTGGAATGATTGTACCAGTGTATATAATGGTTAAAGTTATTATTGCAATCCAACGGTTTCAATACCAGGGTCATCAGCATTCCCCTATGCAAGCATACGAGGAAAATGTAATAGGACAATCTCAGTTGCGTGTCATTCATATTCAGTGA 669 0.3857 MVEQIMSSPNILVQCRICHDEDEESNMDTPCSCCGTLKYAHQKCVQRWCNEKGDTTCEICQQQLKPGYTAPPLPPLLHYGGSPINFGGNWEISRRDLHNHQFIAMFNGANREFLDLDFEYSLAPSTRSLIFCRIIAIIFIVLLLLRHTLPIILILSGARAYSLAVFMLIVLRIIGMIVPVYIMVKVIIAIQRFQYQGHQHSPMQAYEENVIGQSQLRVIHIQ 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00483 222 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Pumo5g00483 222 SMART ringv_2 14 61 IPR011016 GO:0008270
Pumo5g00483 222 SUPERFAMILY RING/U-box 13 64 - -
Pumo5g00483 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Pumo5g00483 222 Pfam Protein of unknown function (DUF3675) 66 187 IPR022143 -
Pumo5g00483 222 CDD RING_CH-C4HC3_MARCH 15 61 - -
Pumo5g00483 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 8 195 IPR033275 -
Pumo5g00483 222 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Pumo5g00483 222 FunFam Zinc finger family protein 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00483 Pumo-Chr5 10077110 10079706 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00483 14 62 C3H Transcription Factor Family AT2G37950 46.154 6.11e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00483 - - gmx:100806609 385.185