Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00479 ATGAGTGCTCTGTATGAAGCCATATTTGAGGGCATCGAGAAAGGGTTTGCAAAAGAAGCAATTAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCCGAGGAAGAGGGTTTGCAGTTGTTACTGCTGCGTGCAATTGAGGAATTTTCTTGTAAGTCTACTTCCAATGCGTTGAAGGAGGTTGCCCTGGTTCTGAAGGCACTCTACGATGCTGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAGAAGGGACTGAAGGGCGATAACAAGAACTCTCAGATTTGGAAGAATGCCCAACTTTTCATTGAATGGCTTCAGAATGCAGAATCAGAATCCGAGGAAGAATAA 351 0.4501 MSALYEAIFEGIEKGFAKEAIKKKSYLAAAVAEEEGLQLLLLRAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSQIWKNAQLFIEWLQNAESESEEE 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00479 116 Gene3D - 1 116 - -
Pumo5g00479 116 ProSiteProfiles W2 domain profile. 1 116 IPR003307 GO:0005515
Pumo5g00479 116 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 115 IPR045196 GO:0003743|GO:0006413
Pumo5g00479 116 Pfam eIF4-gamma/eIF5/eIF2-epsilon 38 116 IPR003307 GO:0005515
Pumo5g00479 116 SUPERFAMILY ARM repeat 3 110 IPR016024 -
Pumo5g00479 116 SMART 542_3 24 112 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00479 Pumo-Chr5 10033172 10033522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00479 1 109 Eukaryotic Initiation Factors Gene Family AT1G77840 57.143 3.70e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00479 K03262 - gmx:100796346 186.808