Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo5g00478 | ATGGCATTACAGAACATTGGTGCCAGTAACAGCGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACAAATATTGTCAATATGGTTGATATTGCAAAAGCCTTGGCAAGGCCAGCTTCTTACACAACAAAGTATTTTGGCTGTGAGCTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCTCATGTTAACGGGGCACATGATACTGCAAAACTTGCTGGCCTTCTCGAGATCTTCATTAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCTTAATTACCAAGAACCAGATGATCCAGCTGAAATGTGCTGCTTGTGGGTTCGTGTCTGATGTTGATATGAGAGACAAGCTAACTACCTTCATTATTAAGAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAATTGGCTGATGAGGAACAGAAAAAGCTGAAGAAAGAGGTTATTAAGAAGAAAGGAACTTCATATTCTAAGGATGGGACCACAAAATCTACCTCTTCAAGGAAAAAGGCAAATGGCTCTGACGAAGACCGTGCATCTCCCCCTCAAAGTCAAATTGATGAGAAGGATCAGGCTCATGTCGAGGAAGATGATGATGATGACGTACAATGGCAAACAGATACATCATTGGAGGCTGCTCGTCTACGAATCCAGGAACAGTTGAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGATGAACCAGAGAAGAAGGAGAAAGCAGCAACTAAGGTAAGTGACAACTCTGAGAATGGTAACTCCATGGACCTACAGGACACTGGTTGCAGAAGTCAAAGCAAATTTGAATAA | 921 | 0.4235 | MALQNIGASNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGELADEEQKKLKKEVIKKKGTSYSKDGTTKSTSSRKKANGSDEDRASPPQSQIDEKDQAHVEEDDDDDVQWQTDTSLEAARLRIQEQLSAVTADMVMLSTDEPEKKEKAATKVSDNSENGNSMDLQDTGCRSQSKFE | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo5g00478 | 306 | MobiDBLite | consensus disorder prediction | 267 | 306 | - | - | |
| Pumo5g00478 | 306 | Pfam | Domain found in IF2B/IF5 | 11 | 127 | IPR002735 | GO:0003743|GO:0006413 | |
| Pumo5g00478 | 306 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 3 | 285 | IPR045196 | GO:0003743|GO:0006413 | |
| Pumo5g00478 | 306 | MobiDBLite | consensus disorder prediction | 149 | 227 | - | - | |
| Pumo5g00478 | 306 | Gene3D | - | 105 | 145 | - | - | |
| Pumo5g00478 | 306 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 98 | 133 | IPR016190 | GO:0003743|GO:0006413 | |
| Pumo5g00478 | 306 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 10 | 101 | IPR016189 | GO:0003743|GO:0006413 | |
| Pumo5g00478 | 306 | FunFam | Eukaryotic translation initiation factor 5 | 105 | 145 | - | - | |
| Pumo5g00478 | 306 | SMART | eIF2Bneu4 | 15 | 129 | IPR002735 | GO:0003743|GO:0006413 | |
| Pumo5g00478 | 306 | Gene3D | - | 2 | 104 | - | - | |
| Pumo5g00478 | 306 | MobiDBLite | consensus disorder prediction | 283 | 306 | - | - | |
| Pumo5g00478 | 306 | FunFam | Eukaryotic translation initiation factor 5 | 1 | 104 | - | - | |
| Pumo5g00478 | 306 | MobiDBLite | consensus disorder prediction | 268 | 282 | - | - | |
| Pumo5g00478 | 306 | MobiDBLite | consensus disorder prediction | 149 | 243 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo5g00478 | Pumo-Chr5 | 10032187 | 10033107 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo5g00478 | 1 | 291 | Eukaryotic Initiation Factors Gene Family | AT1G36730 | 72.355 | 1.60e-136 | 392 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo5g00478 | K03262 | - | gmx:100777906 | 497.278 |