Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00474 ATGGCATGTTTCAATCCTGAAACAGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTACATAGAGATGAAAGAACTCTTCTCTGGGGACAAAGTCTTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTCGTTTGGGAAATAAGAGGAGCAGACTTTACAGTATCCCCAGTCCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTCGCTGTGTCTCAGACAGAAGCCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACTGCTGAAGACTAA 393 0.4249 MACFNPETEEYQSVCRVMSGFSDSFYIEMKELFSGDKVLSKKPPYYQTGEAPDMWFCPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRSPEECSTAADIVEMFHSQTRKMDVTAED 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00474 130 CDD OBF_DNA_ligase_I 1 119 - -
Pumo5g00474 130 Pfam ATP dependent DNA ligase C terminal region 1 101 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pumo5g00474 130 Gene3D - 1 129 IPR012340 -
Pumo5g00474 130 FunFam DNA ligase 1 129 - -
Pumo5g00474 130 SUPERFAMILY Nucleic acid-binding proteins 1 120 IPR012340 -
Pumo5g00474 130 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 124 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00474 1 120 Core DNA Replication Machinery Family AT1G49250 43.548 2.50e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00474 - - gmx:100807673 259.61