Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00473 ATGTTTCTATCACACAGTTTGTTGGCCTTATCTCCAGCAGATGTGCTTCCTACTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGACGTTGCCCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGCACATCTCGGAAAAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGCAGAAAATTTAAAGGAGAAACTTCAGGTTCTTTCTATGGCTGTTGTTGAAGCATATAACATACTGCCAAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCAGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCTATTCGTGTTTTTTCAAGAAATGGGGACGAATCAACTTCAAGATTTCCTGATCTGATTGACATAATTAAGGAATACAGCAAGCCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATTATGTCTTTTCAGGAGCTATCTTCACGTGGGCGAGGTGGCAAAGATACGTTAGTTACTGCAGAGAGCATCAAGGTGGATATTTGCATCTTTGTCTTTGATATCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATCGAAGCAGATGATGCTTGCTTAACCTGTGAATCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACCCTTGATTTAGTACCAATTGGTGCTTGGCACGGAAATGGAAGGAAAGCTGGATGGTAA 1413 0.3956 MFLSHSLLALSPADVLPTVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSCPTLHQEGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDESTSRFPDLIDIIKEYSKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRGRGGKDTLVTAESIKVDICIFVFDIMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTIEADDACLTCESTLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGW 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00473 470 Pfam DNA ligase N terminus 10 152 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo5g00473 470 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 178 444 - -
Pumo5g00473 470 FunFam DNA ligase 251 382 - -
Pumo5g00473 470 Gene3D - 232 446 - -
Pumo5g00473 470 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 5 470 - -
Pumo5g00473 470 Gene3D DNA ligase/mRNA capping enzyme 251 382 - -
Pumo5g00473 470 Pfam ATP dependent DNA ligase domain 222 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pumo5g00473 470 Gene3D - 2 224 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo5g00473 470 CDD Adenylation_DNA_ligase_I_Euk 213 445 - -
Pumo5g00473 470 Gene3D - 447 470 IPR012340 -
Pumo5g00473 470 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 6 205 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo5g00473 470 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 246 254 IPR016059 GO:0003909
Pumo5g00473 470 ProSiteProfiles ATP-dependent DNA ligase family profile. 333 470 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pumo5g00473 470 NCBIfam ATP-dependent DNA ligase 34 470 IPR000977 GO:0003910|GO:0005524|GO:0071897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00473 Pumo-Chr5 9975008 9981660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00473 5 469 Core DNA Replication Machinery Family AT1G08130 38.065 4.78e-110 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00473 - - gmx:100807673 907.901