Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00465 ATGTCTCGTAAGCAGATGATCAGTGCTGAAACTCCCATGTTGATGTCAAAAGCATGTGAGATTTTCATTCAGGAGCTCACTTTTCGTGCCTGGATGCATGCTGAACAGAGCAATAAGCGTATTGTGCAGCCTTGTGACGTTGCCAATGTTATTATGCAAACTGATACCATGAATTTCCTCACCGAGATTATTCCAAACGACCTCCTCAAATATTTCTGTGCTTTTGATGCCAAGGGAGAGAATGCTAGAAACATTGCAAAAGGAAGCCAAGTTGCTCTGCCCTACACTACTGGTTTTGTGGAAAATCCTATGAGGAATAAAGAGAATGCTGGAAACGTTGCGGAAGGAAACCAAGCTACCTTGCCTTACACTACTGGTTTTATGGGAAATCCTATGAATATGATGAATATGGGCAATGAAGAGAATGTTGGAAACATTGCGAAAGGAAACCAAGCTGCCCTACGTTACAATGTTGGTTTTATGGAAAATTCTATGAATATGATGAATATGGGCAATGAAGACAATGCTGGAAACATTGTAGATGGAAGCCAAGCTACCTTACCTTACATGGCTAGTTTTATGGGAAATCCTATGATAAATATGGGTAGTGAAGAGAATGCTGGAAACATTACAGAAGGAAGTCAAGTTGCCCTGCCTTGCAATGTTGGTTTTATGGGAAATCTTATGAATATGATGCATATGAGCAGTGAAGAGAATGCTAGAAACATTGAAGAAGGAAGTCAAGCTGACTTGTCTTACATTGTTGGTTTTATGGGAAATCCTATGAATATGATGAATATGAGCAGTGACTTGGAGGCAGGAAACCAACTGATTCCTCAACCCAACATGATGCAGCCACCCTTTATGCCTTCAGATCAATTGCCTTACAATTTTCAACCCAATGCTGTGGTTGGTTTGAAAAAACGTTGTTTCAAGAAAAATCTCATCTTCGTTGGACTGGAACTCGTAGATTGCAGTCGCACCGTCGGCTACCATGATGAGATGAGTAATTTTTCTTCTTCCTTAGTTTCAAACCCTATTTCCTCTTTCGATCTCTCTCACACCAAATTGATTTTTATTTGTCTAGGCTATGGTTTGAAAAAATGTTGTTTCAAGAAAAATCTCACCTTCGTAGGATTGGAACTTATAGATTGCAGTCGCAGCATCGGCTATCACAATGAGATGATGGTTGTTTCGCTGGAAGCCACGGCTCATGATGCAATGGAGATGACCAAAGACCACCAGAGACAGGGACGCATGGGAAAGAAAATCATGTGCCCATGGATGTTCTGTCTTTTCAACAGGGTGCCTACAAGGTTTGGTTTTGCTTCCCCTTCTCTCACTCTTTTGTTGTATGCTAGTGATTTGTCAGTTGTAAATCATGGTTCCCAATTCAAGTACATGATGAGGAAGCTCTTGCTGCAAAATGAGTTAGGAAGAACAGTTCCTTGCATAGATCTCAGGGACACTTTTGATGTTAAGGGGTATATAACACACGGGATACTTAAGCTGGAAAGGAAATAG 1524 0.4081 MSRKQMISAETPMLMSKACEIFIQELTFRAWMHAEQSNKRIVQPCDVANVIMQTDTMNFLTEIIPNDLLKYFCAFDAKGENARNIAKGSQVALPYTTGFVENPMRNKENAGNVAEGNQATLPYTTGFMGNPMNMMNMGNEENVGNIAKGNQAALRYNVGFMENSMNMMNMGNEDNAGNIVDGSQATLPYMASFMGNPMINMGSEENAGNITEGSQVALPCNVGFMGNLMNMMHMSSEENARNIEEGSQADLSYIVGFMGNPMNMMNMSSDLEAGNQLIPQPNMMQPPFMPSDQLPYNFQPNAVVGLKKRCFKKNLIFVGLELVDCSRTVGYHDEMSNFSSSLVSNPISSFDLSHTKLIFICLGYGLKKCCFKKNLTFVGLELIDCSRSIGYHNEMMVVSLEATAHDAMEMTKDHQRQGRMGKKIMCPWMFCLFNRVPTRFGFASPSLTLLLYASDLSVVNHGSQFKYMMRKLLLQNELGRTVPCIDLRDTFDVKGYITHGILKLERK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00465 507 Gene3D Histone, subunit A 2 66 IPR009072 GO:0046982
Pumo5g00465 507 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 5 49 IPR003958 -
Pumo5g00465 507 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 101 - -
Pumo5g00465 507 SUPERFAMILY Histone-fold 5 66 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00465 Pumo-Chr5 9893133 9900228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00465 5 122 CCAAT-HAP5 Transcription Factor Family AT3G48590 37.500 6.85e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pumo5g00465 CBFD_NFYB_HMF 5.7e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00465 - K08066 gsj:114370134 122.864