Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00441 ATGGGTGAAATTGAATACCATGCACCATCCACTACTAGCACTCCACCTCTAAAGCTCTTTGGCATCAACATTAACAAGTCCCCAGAAGATCAAACTCACGAAGCAGGTTCGAATTCTGAGCCTTTCAATTCAAGAAAATACGAGTGCCAGTACTGCTGCAGAGAATTCGCAAACTCACAGGCACTAGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCTTGAAACGTGCTCAAATGCAAGCTGCTCGTGGCTTTGTTGCTTCACATATTCAAAACACAATCATATCAAGCTTCTCACCACAATCTCAGCCACCTTTGTCGTGGATATGCACACCACATGCAGGTGCATATCATTCAGGAGCCTTTGTGGCACCAGGAAGACGAGTCTATGCTGCAACTGCTGGTCCCTCCATCACTGATGGCCGTGGCCACCGCCACCCTCTGCCGCGGTTTGGTGGCTTCAACGGTGGCGATAGTAGTGGTGGTGGGTTCGGTTTGGATTTGCATCTTAGCCTATGA 525 0.4914 MGEIEYHAPSTTSTPPLKLFGININKSPEDQTHEAGSNSEPFNSRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHIQNTIISSFSPQSQPPLSWICTPHAGAYHSGAFVAPGRRVYAATAGPSITDGRGHRHPLPRFGGFNGGDSSGGGFGLDLHLSL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00441 174 PANTHER ZINC FINGER PROTEIN 5 11 174 IPR044299 GO:0010090
Pumo5g00441 174 MobiDBLite consensus disorder prediction 1 42 - -
Pumo5g00441 174 Gene3D Classic Zinc Finger 29 99 - -
Pumo5g00441 174 MobiDBLite consensus disorder prediction 7 42 - -
Pumo5g00441 174 FunFam Zinc finger protein 6 27 94 - -
Pumo5g00441 174 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Pumo5g00441 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Pumo5g00441 174 SUPERFAMILY beta-beta-alpha zinc fingers 43 74 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00441 Pumo-Chr5 9616064 9617076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00441 12 174 C2H2 Transcription Factor Family AT1G67030 44.388 2.65e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00441 - - gmx:100527555 272.707