Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00424 ATGCGGATGAGTTGCAATGGATGTCGAGTTCTGAGAAAAGGTTGCAGTGAAAATTGCAGCATCAGACCCTGTTTACAATGGATCAAAAGCCCAGAATCCCAAGCCAATGCTACCGTGTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAACCTCGTTAACGCAGGCCCCGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTATGGGTCTGTCGGTTTGTTATGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAAACGTCTTGAAAGGCGCGCCAATTACGCCGATCACCTCCGAAGCCGCCGCTAGCGGGCGGGGCCCACCGCTCAAGGCTTACGACATACGCCACGTGTCCAAAGACGAGAACTCCGCCGCGTCGAACGAAACTCAGCAACAACGAGTCAAGACTCGGTCCCGAGTGAAGCGACCCATCGCCAACAACGCCAAGCCCAAATCCACCACCAACGAAAACAACAACAATACTGATAATAATAATAAGGGAACCGAATTGGGTTCGGCTGAACCGGGTTTGGTGACATGCGAGTGGACTGAAGAGGTGTTGAACCGGTCTGGAAGTCACGATTCGTCGCTGAGCCACCAGTCGGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGCTGTCGGTGGAGACGGCGGAGACTTCGATTCTCTTCCGAGATGAACCGGAATCGAACCTAAAGCGCGTAGACCGGACCGATGATGTTGGTTTAGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCTGCGCGTGGTTCCGGTGAAGAAGAGAAGGATTGAGTTGAAGGATTTTAGTGGCTCCGCTGAGAGTGGCTCCTGCAAGATGGAGCTGGGGCTTGAATTCTCGGCTTGA 921 0.5429 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSKDENSAASNETQQQRVKTRSRVKRPIANNAKPKSTTNENNNNTDNNNKGTELGSAEPGLVTCEWTEEVLNRSGSHDSSLSHQSEAANAVESESMLSVETAETSILFRDEPESNLKRVDRTDDVGLELTLGFEPVSRALRVVPVKKRRIELKDFSGSAESGSCKMELGLEFSA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00424 306 MobiDBLite consensus disorder prediction 205 228 - -
Pumo5g00424 306 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Pumo5g00424 306 PIRSF AS2 1 305 IPR017414 -
Pumo5g00424 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Pumo5g00424 306 MobiDBLite consensus disorder prediction 163 186 - -
Pumo5g00424 306 MobiDBLite consensus disorder prediction 134 189 - -
Pumo5g00424 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00424 Pumo-Chr5 9318082 9320201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00424 1 302 AS2 family AT3G02550 56.209 3.16e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g00424 LOB 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00424 - - gmx:100807854 533.487