Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00421 ATGGCCCCTTTCACTTGCCCTACACCTTCACTTATTGGAAAGAAGAAGGTTGTGTTCATAATGGGTGCAACTGGCACGGGCAAAACCAAGCTATCCATCAACTTGGGCACTCAATTTCCCTCCGAAATCATCAACTCTGACAAAATCCAAGTCTACAAGGGCCTTGACATCATCACCAACAAGGTGCCAGAGTCTGAACGTTGTGCCATTCCCCATCACCTGCTAGGCATCATCGACGACCCTGATTATGACTTCACCGTTGATGACTTTTGCAAACGCGTCCTTGCTGCTCTTGATACTATCATACAAAATGGACACCTACCAATTATCGTGGGAGGCTCAAACACTTACCTTGCAGCATTGCTTGAGGACCCTAACATCGCATTTCGTTCCAAATATGATTGTTGCTTCATCTGGATTGATGTGTCTTTACCTGTGCTGTTTCAGTATTTGGATAAAAGGGTGGATGAAATGGTTGATGCAGGAGTTGTGGATGAGATTCGAGAAGCTTTTGTGGCTGGAGCAGATTACTCTCGTGGGGTTAGAAGAGCCATCGGGGTTCCTGAGCTGGGAGAGTATTTCCTGCTTGAGAAGGAAATAGATGATGAGGCTCAAAAGGAGAATATCTTGCATCATGCTATTGCGAGAACCAAAGAGAACACTTGTAAGTTGGCTGAGATGCAACTCTTGAAGATCCATAGGATGAACTATGAGCTTGGATGGGGAATGACTAGAATTGATTCCACACAAGTGTTTGAGGCAGTTTTAAAAGGAGTGGATTATAAGCACTTGTACCAAGAGATTGTGTTCAAACCAAGCATGGAGATAGTGAAAAGATTTCTACAGAAGACAACTCCAGAAGGAGGAAAGACATTGCGCCAAAATGGTGAAAAGTGA 897 0.4415 MAPFTCPTPSLIGKKKVVFIMGATGTGKTKLSINLGTQFPSEIINSDKIQVYKGLDIITNKVPESERCAIPHHLLGIIDDPDYDFTVDDFCKRVLAALDTIIQNGHLPIIVGGSNTYLAALLEDPNIAFRSKYDCCFIWIDVSLPVLFQYLDKRVDEMVDAGVVDEIREAFVAGADYSRGVRRAIGVPELGEYFLLEKEIDDEAQKENILHHAIARTKENTCKLAEMQLLKIHRMNYELGWGMTRIDSTQVFEAVLKGVDYKHLYQEIVFKPSMEIVKRFLQKTTPEGGKTLRQNGEK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00421 298 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 14 281 IPR039657 -
Pumo5g00421 298 Gene3D - 14 281 IPR027417 -
Pumo5g00421 298 FunFam Adenylate isopentenyltransferase 5, chloroplastic 144 243 - -
Pumo5g00421 298 Pfam IPP transferase 50 124 - -
Pumo5g00421 298 Pfam IPP transferase 130 229 - -
Pumo5g00421 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 175 IPR027417 -
Pumo5g00421 298 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 144 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00421 Pumo-Chr5 9247841 9248737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00421 114 295 C2H2 Transcription Factor Family AT2G27760 30.986 2.85e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00421 K10760 - gmx:121173984 526.554