Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00381 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTAGTCGTAAAAGCTCCGAACCACCGTCTCCGGCGGGGAGATACGTCAAGACTCGCGCTGCACTCGCCAGGGAGGCGGCGGCGGAGAGGCCAAGAACTCGTTTGGCGGCCAAAAAATTAGAAGAGGAGGAGAAGCCGGTTATAGTAATATCCGATCACACAAAGAAAGACCTTGAAGGCGGCGCGATGGGCGACGAGAGCGGTGGCTTGAGTGCAAACAAGGGCGTTGCACAAGAAGATGACGCCAACGCAGCTCCTTTTCCGGAGAGGGTTCAAGTTGGAGGGTCACCTGTCTACAAAGTAGAGAGGAAACTGGGCAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACTGGTGGTAACGACCGTACCACTGGTGCTGGTGCCACTGAGGTGGCTTTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACAAGGGGAATATTATGTGATGGTTATGGACATGCTTGGTCCAAGCTTATGGGATGTTTGGAATTCCTCAAGCCAGTCGATGAGCGCGGAAATGGTTGCATGTATTGCAGTCGAGTCCCTGTCGATCCTGGAGAAGATGCATGCAAGAGGCTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAACCTTCTACACCACAAGAGAAGAAATTGTTTCTTGTAGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGACGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCAGAAATGCTATGCTGTTTCTGCCCTGCTCCTTTTAGGCAGTTTCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCCAGGCTAATATCTTTGTTTGATGGTATGCTGGGACCAAATCCTGCTTTGAGGCCAATTAACACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAACATTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTAGCGGATGCAAGATTAGCTCAGCATGTGGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGAATGGATCATGGAACAATGGGAAAAGAACTATTACATTACTTCTATTGCAGGGGCTAATAATGGGAGCTCTCTCGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGTGATTCATTCCCGTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGACGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATACTGAGCATTCCTAGGCGCAGGCCAGGAGATGAAACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTACGGGCGCACAGTATGCTGA 2028 0.462 MPELRSGPRRRRAPVSRKSSEPPSPAGRYVKTRAALAREAAAERPRTRLAAKKLEEEEKPVIVISDHTKKDLEGGAMGDESGGLSANKGVAQEDDANAAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTTGAGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQSMSAEMVACIAVESLSILEKMHARGYVHGDVKPENFLLGQPSTPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSRLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00381 675 MobiDBLite consensus disorder prediction 1 17 - -
Pumo5g00381 675 Coils Coil 37 57 - -
Pumo5g00381 675 PANTHER CASEIN KINASE-RELATED 113 638 - -
Pumo5g00381 675 Gene3D Transferase(Phosphotransferase) domain 1 85 432 - -
Pumo5g00381 675 Pfam Protein kinase domain 113 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00381 675 SUPERFAMILY Protein kinase-like (PK-like) 113 396 IPR011009 -
Pumo5g00381 675 FunFam casein kinase 1-like protein HD16 86 431 - -
Pumo5g00381 675 MobiDBLite consensus disorder prediction 1 31 - -
Pumo5g00381 675 ProSiteProfiles Protein kinase domain profile. 113 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00381 675 SMART serkin_6 113 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00381 675 CDD STKc_CK1 113 388 - -
Pumo5g00381 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pumo5g00381 675 ProSitePatterns Protein kinases ATP-binding region signature. 119 151 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00381 Pumo-Chr5 8737138 8744443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00381 100 270 EF-hand Containing Proteins AT4G36070 28.415 8.75e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pumo5g00381 Pkinase 6.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00381 - - gmx:100819969 1311.59