Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00380 ATGGCTTCAACATCTTGTGTCAAAGAGACAGCTCCAGTTCCAATGTCTCAACCATATCCACCACCTCTTGCAAAATATGAGGATGTTGTGGCAAATCCCAAGCTCTTCATGTTTACCTTAGAGAAGCTTCACGCTTCTATGGGCACCAAGTTCATGATTCCTATCATTGGCGGAAAAGAACTAGATTTGTGTCGCCTCTTTATTGAAGTCACTTCTCGTGGAGGGTTTGAGAAGGTTATTAAAGAAAGAAGATGGAAAGAAGTAACTGCAATTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTATGTGCTGCGGAAATACTATTCTTCATTGCTTTACCACTATGAACAAATCTACTATTTTAAAGCCAATCAATGGACCCCTACAACTACTGATGCTCAGCAGAATCAATCAACCATGCCGGTTCCTGCTCAGAGAGCACAATTTTCACAGTCTTCTCCAGGAGCCGTCTTTCAACAGTCAAGAGTTAACGCTGCTGAATTGCCTCAAGTGTCTTTCTCAGGATCTTCAGTGGTTGGAGTCATAGATGGGAAGTTTGAAAGTGGGTATCTAGTTTCTGTTTCAGTAGGTTCAGAGATGTTCAGAGGCGTACTGTATGAGGCTCCACAAATCACCGCATTGGCTGCATCTGCATCACATCAAAACACTATGGTAAAGAACAACAATGCCGATGCTTCAATGGGTGTTGGTCGTCGGCGTCGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTCAAGCAACTATACCATGGCAGGGACAGGGACATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGACCCTGAAAAATCTGTTTATCAAGAGAAGGCTGTTAGAGATAAAGGGAGGTACAGAGCAGAAATGGAGGATTATCGCGAGAGACTGAAGATGGGCGGTGTTATGAGTGATGCTGTGCCACTGCAACTGCAACTGCAACAACGGCTACCTGATGTGGATGTAAAATTGGTACGTTCAGAGGAGAGCAGTTCTGGTGGAAGTGAGTACGAAGATGCTGAAGCTGAAGCTGAAGCTGAAGCTACCTATAAGGAGGGAAGTTTTCAGTTTTTTCCCCATTGCCAGAGACAAGGGAATGATCATCATGGAGTTCAAAAGAGCAAAAATATGCTGGCACTATTTTAG 1233 0.4331 MASTSCVKETAPVPMSQPYPPPLAKYEDVVANPKLFMFTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTSRGGFEKVIKERRWKEVTAIFNFPSTATNASYVLRKYYSSLLYHYEQIYYFKANQWTPTTTDAQQNQSTMPVPAQRAQFSQSSPGAVFQQSRVNAAELPQVSFSGSSVVGVIDGKFESGYLVSVSVGSEMFRGVLYEAPQITALAASASHQNTMVKNNNADASMGVGRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKQLYHGRDRDISRMIGELWNKLKDPEKSVYQEKAVRDKGRYRAEMEDYRERLKMGGVMSDAVPLQLQLQQRLPDVDVKLVRSEESSSGGSEYEDAEAEAEAEATYKEGSFQFFPHCQRQGNDHHGVQKSKNMLALF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00380 410 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 361 - -
Pumo5g00380 410 FunFam High mobility group B protein 15 238 333 - -
Pumo5g00380 410 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 323 IPR009071 -
Pumo5g00380 410 Pfam ARID/BRIGHT DNA binding domain 34 117 IPR001606 GO:0003677
Pumo5g00380 410 MobiDBLite consensus disorder prediction 354 377 - -
Pumo5g00380 410 MobiDBLite consensus disorder prediction 229 262 - -
Pumo5g00380 410 SUPERFAMILY ARID-like 28 131 IPR036431 GO:0003677
Pumo5g00380 410 CDD HMG-box_AtHMGB9-like 256 322 - -
Pumo5g00380 410 SMART hmgende2 255 324 IPR009071 -
Pumo5g00380 410 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Pumo5g00380 410 Pfam HMG (high mobility group) box 256 323 IPR009071 -
Pumo5g00380 410 SUPERFAMILY HMG-box 244 327 IPR036910 -
Pumo5g00380 410 Gene3D - 23 141 IPR036431 GO:0003677
Pumo5g00380 410 Gene3D High mobility group box domain 240 333 IPR036910 -
Pumo5g00380 410 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Pumo5g00380 410 SMART bright_3 31 122 IPR001606 GO:0003677
Pumo5g00380 410 SMART ARID_2 27 117 - -
Pumo5g00380 410 Coils Coil 305 325 - -
Pumo5g00380 410 FunFam High mobility group B protein 15 24 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00380 Pumo-Chr5 8722170 8724397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00380 1 357 ARID Transcription Factor Family AT1G04880 56.989 4.82e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo5g00380 ARID 2.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00380 - - gmx:100783284 487.648