Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00378 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAGGGGTTCAAAGGAATCAGAAGAGTGACAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAGCCTCTTTACTCTTTGGAAGGGAGACTTTGTGTATCAAGTGAAAGAATTCAAACACACAGAACAAAGTCTGATGCCTCAAGATATCAGATTACAAGTGGACAGTTAAAAGCTGACACTCATACTGCTAAGAACCGGAGGTCAAGGAAAAGTCTTTTTTTGAGAGACAAAATGGATGAACGGTTGAAGAATGAAACTGAGAAGAACTCTTCTGGCGATATAGATTCAGGCAAAGGAGTTGATACCAATTCATCAGAATACATGCCAAGGAGGGATGAGATTTCTGAGGTGATTGAGCAAGAAGATAGCAGAGTTAAAGATACTTATTCAAAAGAAGTGTCTGCAAAAAAAGGTAAAGAAAAGAATTTCAATGAGGAGAAATGGGGGCAAAAACCTATCAAGGATGCAAAGGTGCACAGCAGAAGTTCCAGTATACATATGCGTAGACACTTGAGTGAAACTGGAGAGAATATAAAAGGCCAGAAGGACTCGTACACTAGATCTAATAGCAATCATGCTATGCAAGCAGCGTCTAGTCCTGCTCTTGATGAAGTAGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATACATAAAGCATTTTCCGAAGGATGAGGATTTTCGTTCTACATTACGTCACAAATGTTTCTCTTCCTTGAATTTCATGGAACTGGAAGAAGAGAACATTACTGAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAAACTGCTGAGGAACCTATATCTACCATGTATCTGAAAAGAACCACGATGCAGCTTAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAGTACAGGCGTACGTGTGGGATCCCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTCTTTTGTGATTCTCCTTTTCAGGCACGGACTATATTGTTGCCTGAACTGTGGGAGCATCTGTTTTCTCAACAATTTTCTCATTTGAAGGCATGGTACAACAAGGAAGCAGAAGTTCTGGTAGATGCACCAAGCAAAACTAGAAAGCTAAAACTTCTTCAAAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCGCCTATTCCTTCAATTGGCATTCCATCAGTTTCTGTCACGGGAAGTTCACTTGGTCATTCTTTTGAGTCTGCTACCTCCGTTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTCGAGTAAACCTGGAGTTTACCAAGTCAAAGATATTAAGGATGATGATAACCTAGACAACTGCGTGAAAGGCTCTTATGGTTCAACTATTGTTAGACAGACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGATTTCTCTCAAGGTGTAGCAATTGATACAATCAAGCCTCAAAAAGGAAATTCAATGACAGCTGCAGAAGAATGGCAGAAAAGGAATCTCAACGAGGACATTAATAACTCTTTCTCTATGCAAACTAATTTAAACAGCCACATTATTGATTCTCTATCACATGAAAAAGCAAATGAACTTGTTCTTAAAAAGCCAAATAAGGCAAGTTCTGCTCTTGAAGGATCATATTTTCCAAGCATTCCACAGGAATTTATTTGTCCTCTTACTGGAGATCTCTTTGAGGAACCAGTCACCCTAGAGACTGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCTGGTAACAGGAAATAATTTGGAATGTGTGACAATGCCATTTACCAACCTTATTTTGCAGCGTTTGATTGATAATTGGAAGTCAGAACGTTTTGATTACCTTATTGATCTTGCTTCTCAAACAGTGGAGAATTCGGAGGAGCTTAAGTTGAAAAAGAGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCTCTTCTCCTCTTTAAAAGAAGAGGACAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTTTGTAGGAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACATGTGGTGTCACTCTTGCTAAACTGTATTCAAGTGGACTCTGGTTGCATATACCAGATAGCGAGGAGTGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGTAAGGAGGCTACTCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACCTCATTCATAAGTGGCTTGGCGGAAGAAAAAGTATTTAATATAATGCATATTCTGCTCATGTATCTCAAGAATTCTTCTCCATTTGAAAAGCCCCTAATTGCTGTTCTTTTGTTACACTTTGATCTGCTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATGCCAGCTTAAATGATGAGAAGGCCAGAGAAAAGTGTTGCAGAGCACTTTTAATCTTGTGTAGCCATTTTTCTTCTACTGGAAAGATACCAACCAAGACTAGCATCTTAAAACAAGCAGGTTATAATAATAATAGCTTAGAAGTGAAACCTCCTGGACATGAAGAAGAGGGTCAACAGTTATATGTAACCATTTCATCGGAAGATGAAGAAAAAAGGGGTGAAGAGTTGCTAAAGAAGCTGCTAGAGTCGTTGATTGGTGATGGAGAAAGCCCGTTTTTGAAGAGCATATCTAGATGTTTAGATTCTAAGCACCTAGATTTGGTGAGAGCGTGTCTAATAACTGTGACATGGTTGAGCTCCTCACTATCTTCGCTATTTAGTGCTGGATTGCATCTTCCCGCCTTCTTATCCATCATCTCTCAGTTGAAAAGAATCTTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTTGTTGATGTAACATGGACTGCAAAACAGCTGCATGCCATTGTGTCTAGGGAGAATTTGTAG 3258 0.3923 MASSLEELLAEEGFKGIRRVTRSRSSFHYGASSEPLYSLEGRLCVSSERIQTHRTKSDASRYQITSGQLKADTHTAKNRRSRKSLFLRDKMDERLKNETEKNSSGDIDSGKGVDTNSSEYMPRRDEISEVIEQEDSRVKDTYSKEVSAKKGKEKNFNEEKWGQKPIKDAKVHSRSSSIHMRRHLSETGENIKGQKDSYTRSNSNHAMQAASSPALDEVAVQAVVSILNGYIKHFPKDEDFRSTLRHKCFSSLNFMELEEENITETKVIRSLEQAIEAIEQTAEEPISTMYLKRTTMQLSIITGLSLNDLKYRRTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTILLPELWEHLFSQQFSHLKAWYNKEAEVLVDAPSKTRKLKLLQKVYNEHLDSGTHIFAVYYKDWLTEGVESPPIPSIGIPSVSVTGSSLGHSFESATSVDPFSPQPMVSKKLYDSMFGSSSKPGVYQVKDIKDDDNLDNCVKGSYGSTIVRQTLTYESETVKFTDQDIEDFSQGVAIDTIKPQKGNSMTAAEEWQKRNLNEDINNSFSMQTNLNSHIIDSLSHEKANELVLKKPNKASSALEGSYFPSIPQEFICPLTGDLFEEPVTLETGQTFEREAIKAWFEKGNRTCLVTGNNLECVTMPFTNLILQRLIDNWKSERFDYLIDLASQTVENSEELKLKKRDEAAVFKLESLFSSLKEEDKSTYAKHLISLGVLPFLCRRFEQGNVEEKSHVVSLLLNCIQVDSGCIYQIARSVNRKCLLELLHSKEATPTTNAILFLTELLSMKRRKDVTSFISGLAEEKVFNIMHILLMYLKNSSPFEKPLIAVLLLHFDLLVEPQKFSIYREVAVNAIAEALDASLNDEKAREKCCRALLILCSHFSSTGKIPTKTSILKQAGYNNNSLEVKPPGHEEEGQQLYVTISSEDEEKRGEELLKKLLESLIGDGESPFLKSISRCLDSKHLDLVRACLITVTWLSSSLSSLFSAGLHLPAFLSIISQLKRILENGELELKTLASLSLLNFSKISECKTLLKTMAEDIAPLLHGLVDVTWTAKQLHAIVSRENL 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00378 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 683 IPR013083 -
Pumo5g00378 1085 MobiDBLite consensus disorder prediction 192 212 - -
Pumo5g00378 1085 MobiDBLite consensus disorder prediction 51 120 - -
Pumo5g00378 1085 CDD RING-Ubox_PUB 610 658 IPR045210 -
Pumo5g00378 1085 PANTHER OS04G0584500 PROTEIN 598 1083 - -
Pumo5g00378 1085 Gene3D - 702 1081 IPR011989 -
Pumo5g00378 1085 SUPERFAMILY ARM repeat 693 1051 IPR016024 -
Pumo5g00378 1085 MobiDBLite consensus disorder prediction 192 210 - -
Pumo5g00378 1085 SMART Ubox_2 612 676 IPR003613 GO:0004842|GO:0016567
Pumo5g00378 1085 MobiDBLite consensus disorder prediction 57 72 - -
Pumo5g00378 1085 ProSiteProfiles U-box domain profile. 608 683 IPR003613 GO:0004842|GO:0016567
Pumo5g00378 1085 Pfam U-box domain 609 679 IPR003613 GO:0004842|GO:0016567
Pumo5g00378 1085 SUPERFAMILY RING/U-box 603 680 - -
Pumo5g00378 1085 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00378 Pumo-Chr5 8674523 8682948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00378 608 980 U-box Gene Family AT5G37490 24.524 1.95e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00378 - - gmx:100820501 1798.1