Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00371 ATGGATGATATTGTTGATGGGAAGAAGGGAAAAGGGAATAAGAAATTAGGTGGGCTGATGCTGATCAGCAAAACATGGGAGAGATGCAAGTCCATAGGACGAGGCCGCAAGAAGCAGATCATGGCAACTAATACTATGACGCTGAGGAGCAAATCCTGGCCTAGCCTTATTAGCCGTGAGCGAGAGCGAGAGCGTGCAAACAAAAACAAAAACAGTAGTACTGTGGCCCCCGAAGGTTGCTTCTCGGTGTACGTTGGAGCCCAGATGCAAAGGTTTGTCATCAAAACCGAGTACGCAAACCATCCCTTGTTCAAGATGTTGCTGGAAGAAGCAGAATCTGAGTATGGTTACAACAGCCAGGGCCCTTTGGCCCTTCCATGCGACGTTGATGTCTTCTACAAGGTCTTGATGGAAATGGACTCTGAACAAACTACTCCTCAAGGCTGCTGCACTCCCTCTAGGTCTGCTTATCATCTTCTTCGCTCTTCCCCTATGCTTGCCATCAACCACTTCTGA 516 0.4826 MDDIVDGKKGKGNKKLGGLMLISKTWERCKSIGRGRKKQIMATNTMTLRSKSWPSLISRERERERANKNKNSSTVAPEGCFSVYVGAQMQRFVIKTEYANHPLFKMLLEEAESEYGYNSQGPLALPCDVDVFYKVLMEMDSEQTTPQGCCTPSRSAYHLLRSSPMLAINHF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00371 171 Pfam Auxin responsive protein 53 136 IPR003676 GO:0009733
Pumo5g00371 171 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 66 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00371 Pumo-Chr5 8603971 8605032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00371 76 136 Calmodulin-binding Proteins AT3G43120 47.541 2.97e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00371 K14488 - gmx:100777217 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00371 5 8603971 8605032 Pumo5g00371 5 8603971 8605032 ECH