Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00367 ATGGAGAAGGTGAACTTTGTGAAGAATGGGGAGATTAGATTGCCTCCGGGGTTCCGTTTCCACCCGACTGATGAGGAACTGGTTGTGCAATACTTGAAGCGTAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATTCCTGAGGTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGCGCAAGAGAGGTACTTCTTCAGCACCAAAGAGGCCAAATATCCTAACGGGAATCGCTCCAACAGAGCCACAAATTCCGGTTATTGGAAGGCAACCGGGTTGGACAAACAAATTGTAACTTCAAAAGGGAACCAAGTTGTCGGGATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTCATGGATCCAGAACTGATTGGATCATGCATGAATATCGCCTCCTTCAGAGCCAGAGCCAGAGCCAGAGCCATGTGGTTGTTCCCATGGAAAATTGGGTTCTATGTCGCATATTTTTGAAGAGGAGAGTTGGTGCTAAAAATGGGGAAGACAAGGACACTACTTTGAGACCCAGCCTTGATATTGATAACATTAACATTAACCGCAAGACTAGGGTGGTTTTCTATGACTTCTTAGCGCAGAACAAGACCGATTCCTCATCCTCGGGCGCCAGTGGAATTACACATGAATCAGATGAACATGAACATGAACATGAAGAGAGCAGTAGCTCCAATAGCTTCCCTTATATTAGAAGAAAACCTTAA 735 0.4571 MEKVNFVKNGEIRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLPGDLAQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLQSQSQSQSHVVVPMENWVLCRIFLKRRVGAKNGEDKDTTLRPSLDIDNININRKTRVVFYDFLAQNKTDSSSSGASGITHESDEHEHEHEESSSSNSFPYIRRKP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00367 244 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Pumo5g00367 244 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 218 - -
Pumo5g00367 244 MobiDBLite consensus disorder prediction 218 232 - -
Pumo5g00367 244 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Pumo5g00367 244 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Pumo5g00367 244 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Pumo5g00367 244 FunFam NAC domain-containing protein 41 23 168 - -
Pumo5g00367 244 MobiDBLite consensus disorder prediction 206 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00367 Pumo-Chr5 8550553 8552595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00367 1 237 NAC Transcription Factor Family AT5G13180 60.700 4.93e-101 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g00367 NAM 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00367 - - gmx:100170709 382.104