Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00360 ATGTTGGAAGATAAGGAACGTCAAAAAGAGAAACTTGAAGGAGAAATAGCAATATTACAAAGTCAATTGTTGCAGTTAAGTCTTGAAGCTGATGAGTTTGTTTTGTTTGGAGAAATTGTCCTGACAGAGAAGAATCACACTGATAGGTTCTATAATACGATTGCATTGATAAATGAAGAATATAATTTCACCTTTGCAAAGTGCTATGCTATCTCCAACTTTTGTTTGATTGTTCAAGGTGAGACACTCTTTCTGATATGGGGCTTTACTTGCTGCAAGATTTGGATGGGACCATCCCTGCCTGGTTCCTCTTCCCTTATTCACTGTTTTGCTGTTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTACTAAGAGGACAAAGAGAACAACTTACACTGAGTACGTTATTTCCAAGGATGCTGCCATCTCTAGATCAAGTAACAGTTACACTGGAAGAAAGATGAGATCTGAAACTCCAAATTCTGGACCCATATACTCTGCTCCTGGTTTTCCTGCTCCATCAGTAGTTTCTTCAGCTGTACAGTTGCCTCCTGGAAAGGTGTTGGTTCCTGCAGATGTCGATCAAGTTCAGCCAGGGACAAGCATTAGCTGCTTTGCAAGCTCTAAAGGCCTGGCAGAAGCTGGACTTATCGAAAACAGGCTTTCAAGATGTTGTGATAGACAGTTGTCTACAGTTGAAGACTATGGCCCATTTTTCTTCTCTCCTAAAAGCCCTTTATCATGTCAGGATCTTGTTAGTTGGAAAATGGTCCTAGAGAAAAGATAG 789 0.4005 MLEDKERQKEKLEGEIAILQSQLLQLSLEADEFVLFGEIVLTEKNHTDRFYNTIALINEEYNFTFAKCYAISNFCLIVQGETLFLIWGFTCCKIWMGPSLPGSSSLIHCFAVLLVENGKFLLSTKRTKRTTYTEYVISKDAAISRSSNSYTGRKMRSETPNSGPIYSAPGFPAPSVVSSAVQLPPGKVLVPADVDQVQPGTSISCFASSKGLAEAGLIENRLSRCCDRQLSTVEDYGPFFFSPKSPLSCQDLVSWKMVLEKR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00360 262 Coils Coil 2 29 - -
Pumo5g00360 262 Gene3D Tubby Protein; Chain A 94 162 IPR025659 -
Pumo5g00360 262 Pfam Tub family 115 158 IPR000007 -
Pumo5g00360 262 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 206 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00360 Pumo-Chr5 8435773 8444124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00360 112 157 TUB Transcription Factor Family AT1G76900 74.468 9.51e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo5g00360 Tub 9.6e-07 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00360 - - gmx:100801281 95.1301