Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00345 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACCAGAATCATTTGTGGAAGGCTAAGAGGGGGTGTTGAATCTCGGATGATGTATGAGATTGAATCAAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCCGATCCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAGCAATCTACCTGTCCAGTATGCCGTCTGCCGTTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCCCTTGATGAGTCTCACACATCAGAAAGAAATGAAGATGTTGAGAGACATGTTGAACCTACTACACCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGAGAACAAGAAGCAAGGCAATGA 585 0.4239 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRIDIEQPEHHVNDPESDPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSERNEDVERHVEPTTPTAASNSLQPTSGEQEARQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00345 194 MobiDBLite consensus disorder prediction 158 172 - -
Pumo5g00345 194 MobiDBLite consensus disorder prediction 174 194 - -
Pumo5g00345 194 Pfam Ring finger domain 89 132 IPR001841 -
Pumo5g00345 194 SUPERFAMILY RING/U-box 80 139 - -
Pumo5g00345 194 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Pumo5g00345 194 MobiDBLite consensus disorder prediction 149 194 - -
Pumo5g00345 194 SMART ring_2 90 131 IPR001841 -
Pumo5g00345 194 CDD RING-H2_EL5-like 89 132 - -
Pumo5g00345 194 PANTHER OS11G0150450 PROTEIN 1 175 - -
Pumo5g00345 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00345 Pumo-Chr5 8012054 8014392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00345 52 135 C3H Transcription Factor Family AT4G33565 36.905 2.60e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00345 - - gmx:100790202 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00345 5 8012054 8014392 Pumo5g00345 5 8012054 8014392 ECH