Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00341 ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTGAAGCCCTACGCGCGCCACGAGGGTTTTGATTTCTTGAGGAACAAGCGTGTTGCTGTGGACCTTTCCTTCTGGATTGTTCAGCACCAGAATGCCATCAAGGGCCATGCCAGAAAACCGCACCTTAGACTCACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGTGCACTTCCCGTGTTCATTGTTGATGGGACTCCGTCGCCGTTGAAATCACAGGCCAGGATTGCAAGATACTTCCAGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAAGTGTTTCAGCTGAGAGGAGCCGTTTGTTTTCAAGTCGTGTTCAAGAATGTGTGGAACTGGTTGAACTACTTGGAATGCCTGTACTAAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATGTTTCTGTTCCAATTCCAAAGAACCATTTGAATGCTACAATATATCAGATATCGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTATGGTTGGAAATGATCATAATATGAATGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCATTTTGTTAAAGCTTTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGGTAAAGGGAATACTTCACAAATTCCCCTCTGCATTAAAGTTGAGGACGATATGGATGTGGATGGGAACTCCCCAAATAGAAAACAATCTCATTGTTCTTTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATATTGTGTCACAAAGGATGATGAAGGTTGCCAGAGAAAACCAGAGGGTTTTAAATGTGATTGCATCTCCTGTGATATGAATAGGAGACATAAGGAGAAAAAAAGACTGGAAAATTGGCACACAAAAATTTGTCACAAGATTGCGGAAGAGCCAAACTTTCCCAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTACTTTTCAGCAAGTGATGGCCCTCACATTATATGGGGAAAACCCAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCATCCTACGTTCGACGGATGATGTTTCCTATCATGTCCACCATCTTTTTGAGAGATATGGCAACAACTACTGTAGAAACTATGTTATTTGGGCAATATGAATTTGATTCTGTAGAACGTGTCAAGGTGAGATACGGATATCAATTTTATGTGGTCAAGTGGAAACGTGCAGGGGTTAACATTGCCGGTAAAGTTCCATTAAAGGAATCAAGTGTGCAACAAGATGCTATAGAGGTTGATGAAACGGTGGATCTACTAGATGACTGTGATGTTCCGGAGATTCATGAAGAAGACGATGGATGTAGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGAGCTGCAGGGGTTAACATTGCCGGTAAAGTTTCGTTAAAGGAATCAAGTGTGCAACAAGATGCTATAGAGCTTGATGAAACGGTGGATCTACTAGATGACCGTGATGTTCCGGAGATTCATGAAGACGATGGATGTAGTTTTCTGCTTACAGATGAAAATATGGACCTTGTAGGAGCTGCTTTTCCAGCAGAAGTCGAAAGGTTTTGGCAAGAGCAGGAACTGAAGAGAAGAAAGAATTCAACATCAAGATCTCAAGAAAATGAAAAATCAGCATCACCAAACTCAAGAAGTGTTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGAAGAGTCATCCAAGAATGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAAAGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGCCGCCTTTTGTTTGATTAG 2001 0.4128 MGVGGNFWDLLKPYARHEGFDFLRNKRVAVDLSFWIVQHQNAIKGHARKPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSQARIARYFQSSGIELASLPVPEESVSAERSRLFSSRVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKCFCSNSKEPFECYNISDIEAGLGLKRKHLIAISLMVGNDHNMNGVRGIGLDTALHFVKAFSEDDILNRLHEIGKGNTSQIPLCIKVEDDMDVDGNSPNRKQSHCSFCGHPGSKKDHMKFPCEYCVTKDDEGCQRKPEGFKCDCISCDMNRRHKEKKRLENWHTKICHKIAEEPNFPKDEIIDMYLCNDNGYFSASDGPHIIWGKPNIEMLIDFLNFHQHWEPSYVRRMMFPIMSTIFLRDMATTTVETMLFGQYEFDSVERVKVRYGYQFYVVKWKRAGVNIAGKVPLKESSVQQDAIEVDETVDLLDDCDVPEIHEEDDGCSFLLTDENMDLVGAAGVNIAGKVSLKESSVQQDAIELDETVDLLDDRDVPEIHEDDGCSFLLTDENMDLVGAAFPAEVERFWQEQELKRRKNSTSRSQENEKSASPNSRSVQLNITEFYPSTKVKHRQSKQGEESSKNADSQGNEGSKMKRKKSSPDKIPKSVRRRLLFD 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00341 666 Pfam XPG N-terminal domain 1 88 IPR006085 GO:0004518
Pumo5g00341 666 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 413 IPR036279 -
Pumo5g00341 666 SMART xpgineu 128 198 IPR006086 GO:0004518
Pumo5g00341 666 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Pumo5g00341 666 Gene3D - 198 259 - -
Pumo5g00341 666 Gene3D - 3 197 - -
Pumo5g00341 666 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 610 IPR006084 -
Pumo5g00341 666 SMART xpgn3 1 96 IPR006085 GO:0004518
Pumo5g00341 666 CDD PIN_GEN1 2 202 - -
Pumo5g00341 666 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Pumo5g00341 666 FunFam Flap endonuclease GEN-like 1 198 256 - -
Pumo5g00341 666 FunFam Flap endonuclease GEN-like 1 2 197 - -
Pumo5g00341 666 MobiDBLite consensus disorder prediction 581 666 - -
Pumo5g00341 666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Pumo5g00341 666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Pumo5g00341 666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Pumo5g00341 666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Pumo5g00341 666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Pumo5g00341 666 MobiDBLite consensus disorder prediction 594 618 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00341 16 359 Core DNA Replication Machinery Family AT5G26680 25.521 1.64e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00341 K15338 - gmx:100779848 955.281