Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00311 ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGTATACCTTACCATAAAAGCTGCTTCAGATGCAGTCACTGCAAGGGATACCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGGTAAGATTAACAATAATCTTCATTTACAGAATAAGACCCCCAACAGACTCTCGTCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAAGCTGCTGCAAACAAGAAGAATGCCACACCACCTCCTGAACCAGCTGAACCAGCTGATCAAGGAGAAGGAGAAGGAGAAGAAGAGCCACCAAAGCCAAAAGAACCTGATTCTGAGGAACACACAGAAGAAAAGTCTCAACATGAAGCATAG 669 0.438 MSFTGTTDKCKACDKTVYVVDMLTLEGIPYHKSCFRCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKINNNLHLQNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANKKNATPPPEPAEPADQGEGEGEEEPPKPKEPDSEEHTEEKSQHEA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00311 222 PANTHER OS06G0237300 PROTEIN 5 78 - -
Pumo5g00311 222 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pumo5g00311 222 SMART lim_4 9 61 IPR001781 -
Pumo5g00311 222 SMART lim_4 105 157 IPR001781 -
Pumo5g00311 222 FunFam LIM domain and actin-binding 1 4 74 - -
Pumo5g00311 222 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Pumo5g00311 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pumo5g00311 222 Gene3D Cysteine Rich Protein 102 170 - -
Pumo5g00311 222 Gene3D Cysteine Rich Protein 4 74 - -
Pumo5g00311 222 FunFam LIM domain and actin-binding 1 100 170 - -
Pumo5g00311 222 MobiDBLite consensus disorder prediction 176 222 - -
Pumo5g00311 222 CDD LIM1_SF3 6 68 - -
Pumo5g00311 222 MobiDBLite consensus disorder prediction 197 222 - -
Pumo5g00311 222 Pfam LIM domain 106 161 IPR001781 -
Pumo5g00311 222 Pfam LIM domain 10 65 IPR001781 -
Pumo5g00311 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Pumo5g00311 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Pumo5g00311 222 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pumo5g00311 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00311 Pumo-Chr5 6922922 6924744 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pumo5g00311 LIM 1.3e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00311 - K09377 gmx:100779513 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00311 5 6922922 6924744 Pumo5g00311 5 6922922 6924744 ECH
Pumo5g00311 5 6922922 6924744 Pumo7g00875 7 15298968 15301336 PCT