Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00308 ATGAACAATAGAGATAGAGAGAGGTACCCACCTGGGATGGGGTTAGGACGAGGGTTGAATTCGAACCCTGGGTTTCAACCGAGGCCACATCAGTATGTGCAGAGGCACATGGTGCAGCATCAGCATCAGCATCATCCGCAGCAGTATCAACAGAACCATCATCAGCATCATCATCATCATCAGCAGCAGCAACAACAACATCAACATCATCAACATCAGCAGCAGCAGCAACAACAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACACCAACGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCATTGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAATATTCCACCACCTGATACACGCTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTAAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTAACTGGAAGTGACATTCTTGCTAGGGCTAAGAATGGAACAGGCAAAACAGCTGCGTTTTGTGTTCCTGCATTGGAAAAAATTGACCAGGATACTAATGTTATTCAAGTTGTAATATTGGTCCCAACAAGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAACTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCAGTTCATCTGCTAGTCGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGGAAACCGTCAAATCCTGATGTTTTCTGCTACATTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCGGAAGCCATACGTCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTACGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACACTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCCGTGAATCGGGTTGAACTACTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTCTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCGGTGAACCTGATCACCTATGAAGATCGCTTCAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAGGCAATATATTGCCGGTAA 1542 0.417 MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQYVQRHMVQHQHQHHPQQYQQNHHQHHHHHQQQQQQHQHHQHQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAIDSSSQDWKARLNIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDTNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGNRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00308 513 Gene3D - 344 513 IPR027417 -
Pumo5g00308 513 FunFam ATP-dependent RNA helicase DDX6 120 343 - -
Pumo5g00308 513 MobiDBLite consensus disorder prediction 1 81 - -
Pumo5g00308 513 CDD SF2_C_DEAD 351 480 - -
Pumo5g00308 513 Gene3D - 101 343 IPR027417 -
Pumo5g00308 513 FunFam ATP-dependent RNA helicase DDX6 344 513 - -
Pumo5g00308 513 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Pumo5g00308 513 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Pumo5g00308 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Pumo5g00308 513 MobiDBLite consensus disorder prediction 103 130 - -
Pumo5g00308 513 CDD DEADc_DDX6 141 341 - -
Pumo5g00308 513 SMART ultradead3 158 354 IPR014001 -
Pumo5g00308 513 MobiDBLite consensus disorder prediction 35 66 - -
Pumo5g00308 513 MobiDBLite consensus disorder prediction 103 117 - -
Pumo5g00308 513 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 61 512 - -
Pumo5g00308 513 MobiDBLite consensus disorder prediction 67 81 - -
Pumo5g00308 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 493 IPR027417 -
Pumo5g00308 513 SMART helicmild6 390 471 IPR001650 -
Pumo5g00308 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 340 IPR014001 -
Pumo5g00308 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 510 IPR001650 -
Pumo5g00308 513 Pfam Helicase conserved C-terminal domain 365 471 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00308 Pumo-Chr5 6878370 6886238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00308 139 510 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 4.90e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00308 K12614 - gmx:100788032 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00308 5 6878370 6886238 Pumo5g00308 5 6878370 6886238 ECH