Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00298 ATGGGTCCTGAAATTACATACAGCTTATCTAATTCTAACCAGAATGGTTACTTGTTGGCAGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCAACTGTTACACTTCGTCAGCCATCAACTTCAGGCGGCACTGTCACATATGAGGGGCGCTTCGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTCACTGATAATGGCGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGCGGCGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTGCAGAAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAATGGCACTGAATAGCATCTCACCAAATCAAAACCTTACTCCAACCCCTCCATCTTTAAGTCCTTGGTCGGTATCGCGTCCGTTGGACATGCGTAACTCCCATGTCGACATTGATTTAATGCGTGGGTGA 666 0.47 MGPEITYSLSNSNQNGYLLAGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGAEVAVESDHQGVHNPMALNSISPNQNLTPTPPSLSPWSVSRPLDMRNSHVDIDLMRG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00298 221 CDD DUF296 33 147 IPR005175 -
Pumo5g00298 221 Pfam Plants and Prokaryotes Conserved (PCC) domain 34 147 IPR005175 -
Pumo5g00298 221 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 186 IPR039605 GO:0003680
Pumo5g00298 221 ProSiteProfiles PPC domain profile profile. 28 170 IPR005175 -
Pumo5g00298 221 MobiDBLite consensus disorder prediction 177 198 - -
Pumo5g00298 221 FunFam AT-hook motif nuclear-localized protein 1-like 34 165 - -
Pumo5g00298 221 Gene3D - 34 176 - -
Pumo5g00298 221 MobiDBLite consensus disorder prediction 170 204 - -
Pumo5g00298 221 SUPERFAMILY AF0104/ALDC/Ptd012-like 32 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00298 Pumo-Chr5 6688159 6691402 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00298 21 218 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.174 4.58e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00298 - - gmx:100814615 345.51