Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00296 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACAGCCTGAGTTACATATTTCGCCTAATATGCGTCCACTGTCTAATCCAAATCTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCGTCGGCAATTTCGGCTCATGGTGTCAATGTTGGAGCTCCTACTGGGGCACCTCCAGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGAACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGTCATCCTGGAGCCTTGACACAAAGCCAGAAACGGGGCAGAGGGCGCCCTCCCGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCAACTGTTACACTTCGTCAGCCGTCAACTTCAGGCGGCACTGTCACATATGAGGGGCGCTTCGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTCACTGATAATGGTGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGCGGCGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTGCAGAAGTTGCTGTGGAGTCGGATCATCAGGGAGTTCATAATCCAATGGCACTGAATAGCATCTCACCAAATCAAAACCTTACTCCAACCCCTCCATCTTTAAGTCCTTGGTCGGTATCGCGTCCATTGGACATGCGTAACTCCCATGTCGACATTGATTTAATGCGTGGGTGA 1026 0.4873 MDRGDQMALSGSYYMQQRGIPGSGAQPELHISPNMRPLSNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSSHPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGAEVAVESDHQGVHNPMALNSISPNQNLTPTPPSLSPWSVSRPLDMRNSHVDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00296 341 CDD DUF296 153 267 IPR005175 -
Pumo5g00296 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Pumo5g00296 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Pumo5g00296 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 305 IPR039605 GO:0003680
Pumo5g00296 341 MobiDBLite consensus disorder prediction 290 324 - -
Pumo5g00296 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Pumo5g00296 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Pumo5g00296 341 MobiDBLite consensus disorder prediction 297 318 - -
Pumo5g00296 341 MobiDBLite consensus disorder prediction 69 136 - -
Pumo5g00296 341 Gene3D - 154 296 - -
Pumo5g00296 341 MobiDBLite consensus disorder prediction 1 50 - -
Pumo5g00296 341 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Pumo5g00296 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Pumo5g00296 341 MobiDBLite consensus disorder prediction 33 50 - -
Pumo5g00296 341 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00296 Pumo-Chr5 6661475 6668078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00296 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.036 1.53e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00296 - - gmx:100814615 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00296 5 6661475 6668078 Pumo5g00296 5 6661475 6668078 ECH
Pumo5g00296 5 6661475 6668078 Pumo7g00855 7 15050955 15057375 PCT