Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00281 ATGGCAACTGATATGCAGAGGCTTGTTGGAACGAGTGAGGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGACGACGATGATGATTATGAGGAAAATGGAGGCGAGCAGGGAAATGCTTCAGGGATGGTTGAGATTGATGGTGGGAATGGGATAGGAACTGCCACTGGTGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAGTAGGCACCCCAGGTGGAGGTACTCGAAGATCTAGGCCGCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCTATCACTGCAAGGATCTTGGCAGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTCAGGGCTGACATAAATGATGTTATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGTACAACTTTTCCCTCAAGATCTCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACAATTGTCACTTCATCATCTTCCCATGTGGCTTCACAACAGACTCCATCTGCTTCTCTCAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTATAATGCAAGTCAAACAAAAGGTGTTTTTATGCCAACTCCATCTCCTTATGATCTATCCTCAAGTTCCCGGTCTCAAACATCTATGGTGGGGGATGGAGAAGCACAAAGAGACAATCGTCCTCTGATTGGTGGTTCAATGGATAATGCTGATGATAAGCAGATTGCTGACTTGCCCCCCAGATTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTACCATTAGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCGGATGGTCTACTAAAGCAGCTGAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAGCTTAAGCTTAAGCTGCAGGTTGTGATGTCATTTCATGAATGTGGAGGAAATTTTGGTGATGATGTTTGTATTCCATTACCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATTGATAAGGAACGAGTTTTAAGAGGCCGTACTGCTTTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAATATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTGGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGTCACGCTATTTGGGCTAGAGGGCCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGAAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGCATTGCTGCAAAGTTATCGGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTGCTGAATTAACTGCTGGGTATTATAACCCATGCAATCGTGATGGTTATGCCGCAATTATGACCATGTTAAAGAGAAATGGAGTTAGCTTAAACGTTCCCTGTGTTGACTTGCACGCATTGAACCAACATGAGGGCTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGGTGGGATGTTGACCTACCAGTTACCAGTCAGAATGGATTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATAATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCCTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTTGTAGAGTTTGAACGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTTCAGTGTCTCCTCGGGAACGTTCCTCTACTACAGAGGCTTCCTGGCTCGTCTGTACGGAAGATATCTGAACTTGTGATTCTCAAACACTGTGGAGTGCTGAATGTTCAGTTTCCTGGCTTGCAGGCTGAGGTTGTTGGCTCTGTTAGCGCTGACGAAGATAATCATCCAGAGTTTCAATTGAAAAGATGTGACTATTTTGGTTTTGTACCCATTATATATCAAGTTTATCGTATCCGTGATGGGAAGAGTTTTGCTACAAGGAAAGTGGATGCAATTCAAAAGGGAAATGTCATATTCACTTTGTTGGCTTCATTTCAGAAGGAAGAATTAGGGTTTCACCACCGGGCAGTGTCTATCCCATCAGCCCCTACTCCAGATAAGCTTTTATCGTTGGAAGAGCTACGTAAGCAACGTCTTATTGACCCTCGTCTGGTTTTCTATGCCATAATGAGAATATTTGTTGCTTCAGAACTTATCGGATCAAGGTTGCTACAAGTGAATTCATTCCCTGGCCCATTGAGATACGGTTCTGTGAACTCTAAAGCTTCAACAAATCAGACCAAATCTCCTCCTAGGTTAGCTTGA 2685 0.4402 MATDMQRLVGTSEDDEEMGMDVKDEDDDDDDYEENGGEQGNASGMVEIDGGNGIGTATGDNRFQQHQQFQEQVGTPGGGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQKPAGGNSTIVTSSSSHVASQQTPSASLRGVASGYRSPLEYNASQTKGVFMPTPSPYDLSSSSRSQTSMVGDGEAQRDNRPLIGGSMDNADDKQIADLPPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEVRGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKRNGVSLNVPCVDLHALNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDNAKPMNDPDGRHFSSFTYLRLSPLLMERQNFVEFERFVKRMHGEAVLDLQCLLGNVPLLQRLPGSSVRKISELVILKHCGVLNVQFPGLQAEVVGSVSADEDNHPEFQLKRCDYFGFVPIIYQVYRIRDGKSFATRKVDAIQKGNVIFTLLASFQKEELGFHHRAVSIPSAPTPDKLLSLEELRKQRLIDPRLVFYAIMRIFVASELIGSRLLQVNSFPGPLRYGSVNSKASTNQTKSPPRLA 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00281 894 MobiDBLite consensus disorder prediction 17 36 - -
Pumo5g00281 894 SUPERFAMILY (Trans)glycosidases 261 699 IPR017853 -
Pumo5g00281 894 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 214 696 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 MobiDBLite consensus disorder prediction 144 181 - -
Pumo5g00281 894 Gene3D - 762 894 IPR042171 -
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 299 313 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 559 570 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 617 639 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 320 338 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 577 600 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 435 457 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 342 363 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 508 527 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 542 558 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 218 IPR008540 -
Pumo5g00281 894 Pfam Thioesterase-like superfamily 770 830 - -
Pumo5g00281 894 MobiDBLite consensus disorder prediction 198 252 - -
Pumo5g00281 894 MobiDBLite consensus disorder prediction 198 225 - -
Pumo5g00281 894 Pfam Glycosyl hydrolase family 14 268 688 IPR001554 GO:0000272|GO:0016161
Pumo5g00281 894 Gene3D Glycosidases 256 714 - -
Pumo5g00281 894 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 769 809 IPR029069 -
Pumo5g00281 894 MobiDBLite consensus disorder prediction 57 77 - -
Pumo5g00281 894 PRINTS Plant beta-amylase signature 683 697 IPR001371 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Plant beta-amylase signature 425 434 IPR001371 GO:0000272|GO:0016161
Pumo5g00281 894 PRINTS Plant beta-amylase signature 668 682 IPR001371 GO:0000272|GO:0016161
Pumo5g00281 894 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00281 Pumo-Chr5 6339842 6352115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00281 1 699 Glycoside Hydrolase AT2G45880 66.051 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Pumo5g00281 Glyco_hydro_14 2.8e-101 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00281 K01177 - gmx:100805560 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00281 5 6339842 6352115 Pumo5g00281 5 6339842 6352115 ECH