Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00266 ATGTTAGTGGAGAAATTTTGGAAGGAGCCTAATCCAAGTGTGGTTGATCAGCCAATCTATGTTGCTGTGACAAAAGAGGTGAAGGAGAGCAAATTAAATCTGATATGGGCAATACAGACCTCTGGAGGAAAGAGGATTTGCATTCTTTATGTGCATGTTCGTGCAACAATGATCCCCCTATTGGGAGGTAAATTTCCTGCAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAGGCAAGACATGCATAAGACTCTGGATGAATATCTTCGTATCTGTCAACGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAACTCGTCTCCCAGCATGGCATCCGAAAGCTTGTTATGGGAGCAGCATCTGATAAGTACTATAATAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATCTCTGTGTGTAAACAAGCACCAGCTTCTTGTCATATACAGTTTGTCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTCGGATGAAGGTAATGCAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGATCCTTGAGATCTCAATCTATTACACTGGGGCAAGATCATCGAGCAAATCTAACCAATCCTGCTCTAGAGTTATTTCGCAGAGTAAGGTCTGCCAATGATGGACATGGAGCAAGCTTTATGGCTGTTTCTTCTCCAGAAGACACTGAAGGGTTTTCAACTCCGCGTGACAGGATGGGAACTGAAGTAAGTTCTGATGAATCAGATAGGCTGTCAAGGATGAGTCCTTCTGGCTTGTCAACATGCTCTGACAGTGCAGTTGAACTAGCGTTGACCCCAAGTTTGATTACTGAAAGCAGTGAGAATGCATTAGAGTTGACTTTGAATCGCCTGATTGTAGAGGATCTTCATCATTCATCTCCTGCCAGTACACTGGATGGTGGAATGGATGATACTATCTACGACCAGATTGAACAGGCTAGGGCTGAGGCTGAGAATGCTACGCTAAATGCTTATAAAGAAACTGTAAGGCGTAGGAAAGCTGAAAAAGATGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACCTGAGGAAAATGGCAGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATATGAAGAGCCTGAGAGACAAGGTTAAGGAAGAACTCCGCCTTGCCCTTGATCAGAAGGCATCACTAGAGAGTCAAATTGCATCATCTGAACTTATGATAAAGGAGTTGGAGCAGAAGATTGTATCTGCTGTGGATCTGTTAACAAGCTACAAGAATGAACGAGATGAATTGCAGATTCAGCGCGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAAAATCAAGGAGAGGCCTCAGGCACCCATGTGCCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTAAAGAAGCAACAAGTAACTTCAATCCATCCTCAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGCGTCACACTGAGGTGGCTATAAAAATGTTGCACTCCAACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGTTGAGCAAGCTAAGGCATCCCAATCTTATCACACTCATAGGAGCCTGCCCAGAATCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGACCGTCTTGCCTGCAAGGATAACACCCCTCCGCTATCATGGCAAGCTCGAATTCGCATTGCTGCCGAACTATGCTCCGCTCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGCGACTTTGGAATCTGTCGTATATTATCGAACTGCGAGAGTTCTAGTAGCAATACTACACAGTTTTGGAGAACTGACCCAAAGGGAACTTTCGTCTACATGGATCCTGAATTCCTTGCCTCAGGGGAACTTACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACTGGGAGGCCAGCATTGGGAATAACAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGAAATCCCTATTAGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGCTGTGATATGAATAGAAAGAGCCGGCCAGATCTTTATTCAGATGTCTGGAGGATACTTGATGCAATGAGGGTTTCTTCTGGAGGTGCAAACTCCTTTGGACTAAGTTCTGAAGGGCTTATACAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTACGAAGCTGAGGCTATACGAGGATGGCTTGACGGCGGTCATGACAATTCACCAATGACAAATAGTAAGCTTGGACATCACAATCTTGTTCCCAACCGCGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAACCACTGA 2589 0.438 MLVEKFWKEPNPSVVDQPIYVAVTKEVKESKLNLIWAIQTSGGKRICILYVHVRATMIPLLGGKFPASALKEEQVQAYWEEERQDMHKTLDEYLRICQRMGVRAEKLHIEMDSIEKGILELVSQHGIRKLVMGAASDKYYNRRMMDLRSKKAISVCKQAPASCHIQFVCKGHLIHTRDRSSDEGNAEVASPLVQQVPNSVRSLRSQSITLGQDHRANLTNPALELFRRVRSANDGHGASFMAVSSPEDTEGFSTPRDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVELALTPSLITESSENALELTLNRLIVEDLHHSSPASTLDGGMDDTIYDQIEQARAEAENATLNAYKETVRRRKAEKDAFEAIRKAKASESLYTEELNLRKMAEEELRKEKEELENMKSLRDKVKEELRLALDQKASLESQIASSELMIKELEQKIVSAVDLLTSYKNERDELQIQRDNALREAEELRKNQGEASGTHVPQLFSEFSFSEIKEATSNFNPSSKIGEGGYGSIFKGVLRHTEVAIKMLHSNSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWALVYEYLPNGSLEDRLACKDNTPPLSWQARIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNTTQFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGANSFGLSSEGLIQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGHDNSPMTNSKLGHHNLVPNRALRSAIQDWLQNH 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00266 862 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 138 - -
Pumo5g00266 862 Pfam U-box domain 793 862 IPR003613 GO:0004842|GO:0016567
Pumo5g00266 862 SMART serkin_6 504 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00266 862 ProSiteProfiles Protein kinase domain profile. 504 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00266 862 Pfam Protein kinase domain 506 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00266 862 Coils Coil 379 476 - -
Pumo5g00266 862 SMART Ubox_2 795 858 IPR003613 GO:0004842|GO:0016567
Pumo5g00266 862 Gene3D Phosphorylase Kinase; domain 1 489 576 - -
Pumo5g00266 862 CDD RING-Ubox_WDSUB1-like 793 848 - -
Pumo5g00266 862 PANTHER OS02G0152300 PROTEIN 19 857 - -
Pumo5g00266 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 862 IPR013083 -
Pumo5g00266 862 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 576 - -
Pumo5g00266 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Pumo5g00266 862 ProSitePatterns Protein kinases ATP-binding region signature. 510 531 IPR017441 GO:0005524
Pumo5g00266 862 Gene3D HUPs 18 163 IPR014729 -
Pumo5g00266 862 CDD STK_N 18 171 - -
Pumo5g00266 862 MobiDBLite consensus disorder prediction 251 269 - -
Pumo5g00266 862 ProSiteProfiles U-box domain profile. 791 862 IPR003613 GO:0004842|GO:0016567
Pumo5g00266 862 MobiDBLite consensus disorder prediction 238 279 - -
Pumo5g00266 862 SUPERFAMILY Protein kinase-like (PK-like) 484 762 IPR011009 -
Pumo5g00266 862 Gene3D Transferase(Phosphotransferase) domain 1 577 780 - -
Pumo5g00266 862 SUPERFAMILY RING/U-box 786 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00266 Pumo-Chr5 6145150 6152815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00266 9 862 U-box Gene Family AT2G45910 51.788 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo5g00266 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00266 - - gmx:100807515 1608.96