Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00251 ATGAGTAACGGGGAGCCATTGGATTTGTATAAACTTTTCATGGTGGTGAAGGAGAAGGGTGGCTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGAGGGAAGAATTTGGGTTGGGTGTGAAGGTTGGTTCTTCTGTGGAACTTGTTTACAGTAAGCACTTGAGTGCTCTAGAGGCATGTTTGAAGAATGTTGCTGATGGTAAGTTCCCCGAGTGTGGTTTAGTGGATGATAGAGTTGAGTTTCGCAAGCATTTGATGGAGGCTGAACTCAAGAGGGTATATGAGTATTTAGATGGGACGAAGTCGTGTGTTAGTAATAGTGTGAAGAGCAAGAATTCGGATTCTAATGGTGATGAATCTGATAATGTATGTGACTATCTAGATGGGAGGAAGTTGTGTGGTACTAATAGGGTGAAGGGCATGAATCCAGAGTCTAATGGGGACAAGAAAGTTCAGAGCGAAGGACTTGTTGATTTGGATATGCTGGACCATGGGACAGATGAGCCTATTCTCAGAAAGTTGTGCAGCCTTAATACTGAAAGGGATATACTGGAAGAGTTTGATGGGGGAAAAATATTAATTGTGGATTCATCCGATGAAGAAAGCAATATGCTAAGATTGTCGGATGGAAGCAAGAGCTGTGATAATGATGATGATGACGATAGTGATGAAATCTTGATATTGGATCCATCTGATGTTGACAAAGAGAGATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCGGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATCCCGAAGTTGGATCAATTCCTGAAAAGTCTAAGTGGAAGTCTTATGGTAGTCAAGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCTGTATTTCTGAAGAAAGATTTTGAGACAATCAGTGAACAACTTAGTTGGCAGGGTCAGAAAATGCATCCTTCCATGTACGATGATTGCGTAGGGGCGATGTACAATCTTAGACAGAGGTTGAAATGTGGCAAGGGGCTATTATTGGGAAAAACTACATCTGAAGGAGTCTCCTCAGCTTCATCTGGAGGAACACATGGAGATTTGGAGAGAACCCCAAGTTCTCATGCTGAAGTGCACATCCCTGTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGAAATGACTTATGAGGTTGATTCCAAGTGGTTGGGGACCCAAATATGGCCTCCAAAAACTGTAAATTCCAAACGTCTTCTTTTTGAAAGGGAACCCATTGGAAAGGGAAGACAAGATTCATGTGGCTGCCAAGTAAAAGGTTCTGTTGAGTGTGTCCGATTCCACGTTTCTAAGAAAAGGTCTAAAGTTAAGTTGGAATTGGGCGAGGCGTTTTACCAATGGAATTTACATAAGGTAGGTGAAGAAGTTAGGGGTTCATGGACAGAGCAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAACGTCTTTCTTTTGCAGTGCAGAGCATATCAGAATAGGCATACTCCTCATAACATTGACAGTGATGATGATGAATCAGAATTTACACCATTGAGGAAAGTTTTCGGACATCAAACACCGAAACCACGCAGCTTCACCTTATTATCCCCGAAAAAAGCCACATTCAAAAAGGAAAATAACAAGTGA 1746 0.4141 MSNGEPLDLYKLFMVVKEKGGYDAVCKNKLWDLVREEFGLGVKVGSSVELVYSKHLSALEACLKNVADGKFPECGLVDDRVEFRKHLMEAELKRVYEYLDGTKSCVSNSVKSKNSDSNGDESDNVCDYLDGRKLCGTNRVKGMNPESNGDKKVQSEGLVDLDMLDHGTDEPILRKLCSLNTERDILEEFDGGKILIVDSSDEESNMLRLSDGSKSCDNDDDDDSDEILILDPSDVDKERFGRKRKRESKSEMLSWITSIAKNPCDPEVGSIPEKSKWKSYGSQEIWKQALLFREAVFLKKDFETISEQLSWQGQKMHPSMYDDCVGAMYNLRQRLKCGKGLLLGKTTSEGVSSASSGGTHGDLERTPSSHAEVHIPVGPNHQAEVPEWTEMTYEVDSKWLGTQIWPPKTVNSKRLLFEREPIGKGRQDSCGCQVKGSVECVRFHVSKKRSKVKLELGEAFYQWNLHKVGEEVRGSWTEQEEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQCRAYQNRHTPHNIDSDDDESEFTPLRKVFGHQTPKPRSFTLLSPKKATFKKENNK 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00251 581 CDD ARID 3 60 - -
Pumo5g00251 581 Pfam Myb-like DNA-binding domain 473 522 IPR001005 -
Pumo5g00251 581 Gene3D - 1 70 IPR036431 GO:0003677
Pumo5g00251 581 MobiDBLite consensus disorder prediction 348 375 - -
Pumo5g00251 581 ProSiteProfiles ELM2 domain profile. 373 497 IPR000949 -
Pumo5g00251 581 SMART bright_3 1 65 IPR001606 GO:0003677
Pumo5g00251 581 SMART ELM2_2 375 427 IPR000949 -
Pumo5g00251 581 SUPERFAMILY ARID-like 3 72 IPR036431 GO:0003677
Pumo5g00251 581 SMART sant 472 525 IPR001005 -
Pumo5g00251 581 MobiDBLite consensus disorder prediction 207 227 - -
Pumo5g00251 581 MobiDBLite consensus disorder prediction 553 581 - -
Pumo5g00251 581 Pfam ARID/BRIGHT DNA binding domain 3 60 IPR001606 GO:0003677
Pumo5g00251 581 ProSiteProfiles ARID domain profile. 1 64 IPR001606 GO:0003677
Pumo5g00251 581 CDD SANT 475 523 IPR001005 -
Pumo5g00251 581 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 2 573 - -
Pumo5g00251 581 MobiDBLite consensus disorder prediction 348 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00251 Pumo-Chr5 5949986 5955494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00251 4 77 ARID Transcription Factor Family AT1G20910 35.065 6.77e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo5g00251 ARID 4.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00251 - - gmx:102667655 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00251 5 5949986 5955494 Pumo5g00251 5 5949986 5955494 ECH
Pumo5g00251 5 5949986 5955494 Pumo7g00809 7 14241885 14245486 PCT