Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00245 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAATCTCATCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACATCCAATGATGGTACGCATGCTTCAGTCAATGCTGGATTTCTTGTTGGTTTGAACCTGGCAGCATCCATGCCTGATACTTTCCAGCCCCCACCTGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTCAATTACACGTGACGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCCTACATCTCCAAGGAAGGCACAACTATCAAAATCAAATGTAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAAAATCCTAGAAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGTGACCAGGAGATGATATTTTGA 555 0.4108 MGGCCCSARKSHLQGAPVYYYCPPTFEERESLTSNDGTHASVNAGFLVGLNLAASMPDTFQPPPVPLPYDMVLGGSASTDSESGRETVSSFETSITRDDVEESDCKAQANSAPTSPRKAQLSKSNVTQVLVTEEEDVCPICLEEYDVENPRNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00245 184 MobiDBLite consensus disorder prediction 76 94 - -
Pumo5g00245 184 FunFam Putative E3 ubiquitin-protein ligase RHB1A 114 183 - -
Pumo5g00245 184 CDD RING-H2_AIRP1-like 134 182 - -
Pumo5g00245 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Pumo5g00245 184 SUPERFAMILY RING/U-box 131 182 - -
Pumo5g00245 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 183 IPR013083 -
Pumo5g00245 184 Pfam Ring finger domain 137 178 IPR001841 -
Pumo5g00245 184 SMART ring_2 138 178 IPR001841 -
Pumo5g00245 184 MobiDBLite consensus disorder prediction 71 120 - -
Pumo5g00245 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00245 Pumo-Chr5 5857979 5861674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00245 1 184 C3H Transcription Factor Family AT4G00335 58.602 1.62e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00245 - - gmx:100812687 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00245 5 5857979 5861674 Pumo5g00245 5 5857979 5861674 ECH
Pumo5g00245 5 5857979 5861674 Pumo7g00806 7 14213652 14218074 PCT