Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00242 ATGGGGTTCCCCGTAGGGTACCCGGAACTGCTTGTCCCCAAACTCTTCCTCCACGCGCTCTCCCTCCTCGCGTGGCTCCGCTCCCTCGTCTTCGCGCTCTTCCGCCTCCTCCGCCTCTCCGACCTCCTCGACACCGACGCCGCCTCCGCTGCCGCCCTCTCGGACCACCCGCCGCCGCTGCCGCGCTCCCCGACGCTCTCCGCCGTCCTCATCCGCGAGTTCCTCCCCATCGCGGCCTTCCGCGACCTCGCCGACGCCGCCGGCGACCCCCCGCCGACGGGCTGCGCCGTGTGCCTGAGCGAATTCTCCGAGGAGGAGGAAATCCGGTGCATGGCGAACTGCAAGCACATTTTCCACCGCGGGTGCGTGGACCGTTGGATCGATCACGATCAGAAAACGTGTCCACTGTGCAGAACTCCCTTCGTTCCGCATCACAAACTCGAAGAATATAACCAGCGCCTATGGGCCGCTTCTGGAGTTTCGCAGTTTTACCAAGACGATTACACGGCTTCATTCTGA 519 0.6455 MGFPVGYPELLVPKLFLHALSLLAWLRSLVFALFRLLRLSDLLDTDAASAAALSDHPPPLPRSPTLSAVLIREFLPIAAFRDLADAAGDPPPTGCAVCLSEFSEEEEIRCMANCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPHHKLEEYNQRLWAASGVSQFYQDDYTASF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00242 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 157 - -
Pumo5g00242 172 SMART ring_2 95 137 IPR001841 -
Pumo5g00242 172 SUPERFAMILY RING/U-box 94 148 - -
Pumo5g00242 172 Pfam Ring finger domain 95 138 IPR001841 -
Pumo5g00242 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 143 IPR013083 -
Pumo5g00242 172 ProSiteProfiles Zinc finger RING-type profile. 95 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00242 Pumo-Chr5 5832361 5833237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00242 1 170 C3H Transcription Factor Family AT1G63840 44.767 5.93e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00242 K16281 - gmx:100813224 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00242 5 5832361 5833237 Pumo5g00242 5 5832361 5833237 ECH
Pumo5g00242 5 5832361 5833237 Pumo7g00799 7 14098004 14099026 PCT