Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00235 ATGGCGATGGAGGGAGATAGAGACGAGTCGGATGAGTCGACTCGGTCGGAGGAGGAATACGACCCGGTGGAGGAGATCCAGCAAGTGATAGAATCGGTGGTTCAATTCGGCGAGTACCGGAGGACCAATAGGAAGGAGTGCCACAACCTCGTGCGTCGTTTCAAGCTCATGTTGCCGCTCTTGGAAGAGCTTCGCGACCTCCCACAACCCTTCCCAGAAAACGGCGTCGTTTGGTTGACCAAACTCAAGGAAGCGCTTTTGTTCGCCAAGGATTTGTTGAAGCTCTGCAGCCAAGGAAGCAAGATTCACCTCTCTATGGAGATCGAGACAGTTATGATCACGTTTCAGAAAGTGTATGAAAAATTAAGCCAAGCGTTTGATGGTGTGCCTTGTGATGAATTGGGTATCTCGGATGAAGTCAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGCGAGCCAGGAGAAGAACTGATACACAGGATATAGAACTTGCAATGGATATGATGGTGGTGTTCTCTGATGAGGATGACAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCTAAAAAGCTGGAGCTTCATAGTGTTGAGGATCTCAATATAGAAACATTGGCTATTAGGAACCTTGCTGCTGAAAGAAAAGGGCAACAGGCTCAGAGTACTCAGAAAATAATTGACCTTCTTAACAAATTCAAACGAATTGCAGGCATGGAAGAAACCAGCGCCCTTGATGATCCTGCCATGCCCAAGACGCTTGAGAGGTCAACCTCTTTGGTCATCCCTTATGAGTTTCTCTGCCCAATCACACTAGAAATCATGACAGATCCTGTTATTGTAACAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCCAACCATAACACATGCCCAAAGACTAGGCAACCTTTGGAACACCTGTCATTGGCACCAAACTGTGCCTTGAAAAGCTTGATTGAAGAATGGTGTGAGAACAACAACTTCAAACTTCCTAAAAAATATAAGTCAGGTCAAGAATGCAGTCCAATAGATAGCAAAGAGGAAATTCCAGCTTTGGTTGAGAGCCTATCATCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAGATACGTATGATATCAAAGGAAAATCCTGAGAATAGGGTTTTGGTTGCTGAACTTGGAGGAATACCACCACTAGTGCAACTCCTGTCTTATCCAGATTCAAAAATACAAGAACATGCTGTGACAGCACTTTTAAATTTATCAATTGATGACGGTAACAAGACACTTATATCCAAAGAAGGTGCCATTCCAGCTATTATAGAAGTGTTGGAGAATGGGAGTTGTGTGGCTAAGGAAAACTCAGCAGCAACTTTATTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTGGGTCAATCAAATGGGTTCCCCCCTTTGGTGGATTTGTTGAGGAATGGAACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTTAACTTATCTATCAACCATGCAAATAAAGGTAGGGCTGTTAGAGCTGGCATTGTGACACCCTTACTTCAATTGCTCAAGGACACAAACTTAGGCATGATTGATGAGGCTCTCTCCATTTTGTTACTCCTTGTATCAAATTCAGAAGCAAGACAAGAGATTGGACAGCTTAGTTTCATTGAAACCCTTGTTGAGTTCATGAGAGAAGGGAGTCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGCTCAAATAACTCATCCTTTACATTGGCAGCACTTCAGTTTGGAGTGTATGAGTATTTAATGGAGATAAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATTGCAATCTTAGATCTCATAAGCAGGAGCGAGCAAATTTAA 1905 0.431 MAMEGDRDESDESTRSEEEYDPVEEIQQVIESVVQFGEYRRTNRKECHNLVRRFKLMLPLLEELRDLPQPFPENGVVWLTKLKEALLFAKDLLKLCSQGSKIHLSMEIETVMITFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLNIETLAIRNLAAERKGQQAQSTQKIIDLLNKFKRIAGMEETSALDDPAMPKTLERSTSLVIPYEFLCPITLEIMTDPVIVTSGQTYERESIEKWFQSNHNTCPKTRQPLEHLSLAPNCALKSLIEEWCENNNFKLPKKYKSGQECSPIDSKEEIPALVESLSSIHLEEQRKAVEKIRMISKENPENRVLVAELGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDDGNKTLISKEGAIPAIIEVLENGSCVAKENSAATLFSLSMLDEIKEIVGQSNGFPPLVDLLRNGTVRGKKDAATALFNLSINHANKGRAVRAGIVTPLLQLLKDTNLGMIDEALSILLLLVSNSEARQEIGQLSFIETLVEFMREGSPKNKECAASVLLELCSNNSSFTLAALQFGVYEYLMEIKQNGTNRAQRKAIAILDLISRSEQI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00235 634 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Pumo5g00235 634 SUPERFAMILY RING/U-box 260 337 - -
Pumo5g00235 634 Coils Coil 137 157 - -
Pumo5g00235 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Pumo5g00235 634 PANTHER U BOX DOMAIN-CONTAINING 44 628 - -
Pumo5g00235 634 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Pumo5g00235 634 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515
Pumo5g00235 634 Pfam Armadillo/beta-catenin-like repeat 468 505 IPR000225 GO:0005515
Pumo5g00235 634 CDD RING-Ubox_PUB 263 315 IPR045210 -
Pumo5g00235 634 FunFam RING-type E3 ubiquitin transferase 19 132 - -
Pumo5g00235 634 MobiDBLite consensus disorder prediction 1 21 - -
Pumo5g00235 634 Gene3D - 346 451 IPR011989 -
Pumo5g00235 634 Gene3D - 452 633 IPR011989 -
Pumo5g00235 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 336 IPR013083 -
Pumo5g00235 634 Gene3D - 18 130 IPR036537 GO:0007166
Pumo5g00235 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 477 519 IPR000225 GO:0005515
Pumo5g00235 634 SUPERFAMILY ARM repeat 354 630 IPR016024 -
Pumo5g00235 634 FunFam RING-type E3 ubiquitin transferase 258 335 - -
Pumo5g00235 634 FunFam RING-type E3 ubiquitin transferase 340 634 - -
Pumo5g00235 634 SMART arm_5 548 588 IPR000225 GO:0005515
Pumo5g00235 634 SMART arm_5 425 465 IPR000225 GO:0005515
Pumo5g00235 634 SMART arm_5 507 547 IPR000225 GO:0005515
Pumo5g00235 634 SMART arm_5 384 424 IPR000225 GO:0005515
Pumo5g00235 634 SMART arm_5 466 506 IPR000225 GO:0005515
Pumo5g00235 634 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00235 Pumo-Chr5 5745954 5749540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00235 23 634 U-box Gene Family AT5G42340 63.149 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00235 - - gmx:100777362 1101.66