Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00230 ATGTCAATCTTCGATGGAGCTTTCATGAACACGCAACTCTCCAAGCACACTTCGATCTTCGGTCTCCGTCTCTGGGTCGTGATCGGAATCCTCATCGGAGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCCCTCTGCCTCGTCTCTCGCCGGAACCGCCGGCGCTCCGTCGCCGGCGGCGGCTACAAGGTGGCCGGAGACGCCGACGGGGCGAAGGACATCCACACGATCGTGCACCTCCCCGGGCCCCACATGCTCCGGCCTCCGGCGCCGGCGAAAGGGCCGGAGATCCACGTGGAGATGGGGAAGAAGACGGAGCACCGGGTGGTGGTGCAGTGCGATAGGGTTTCGAGTGAAGAGAGTAAGGTGACGGTGGGGAGTGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCCTGAGGTTTCACATCTCGGATGGGGGAGATGGTACACTCTGAGGGAGCTCGAGGATGCCACTGGAGGGTTGAGTCCTGAAAATGTGGTTGGTGAAGGTGGCTATGGCATTGTCTATCATGGGGTGCTCAATGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGACAAGCTGAGAAAGAATTTAAAGTAGAGGTGGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGAACATACGGATGAACATTATATTGGGAACTGCAAGAGGATTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCATGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATTACCGGAAGAAGTCCTGTTGATTATAATAGACCACAAGGAGAGGTTAATTTAATAGATTGGTTGAAGACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCCGATGCAACAAAGAGGCCGAAAATGGGACATGTGATCCACATGCTTGAAGCAGACGACCTGTTATTCCATACTGAACAAAGAACTGAGGGAGAGTCTTCCCGTTCCTATCAAAGTGAGCATAAGGACTCAAATTTAGATAAGAGAACAGATGGAGGTGTCATTGATCAGAATGTAGATGCTAGTAGTAGAGATCATCATCAGCCCACTAGATGGAGATGA 1527 0.4925 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAGGGYKVAGDADGAKDIHTIVHLPGPHMLRPPAPAKGPEIHVEMGKKTEHRVVVQCDRVSSEESKVTVGSGCETTSSFGSGSVGGLGLGLGLGLGLGLGPEVSHLGWGRWYTLRELEDATGGLSPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYNRPQGEVNLIDWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHTEQRTEGESSRSYQSEHKDSNLDKRTDGGVIDQNVDASSRDHHQPTRWR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00230 508 SUPERFAMILY Protein kinase-like (PK-like) 160 452 IPR011009 -
Pumo5g00230 508 SMART serkin_6 180 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00230 508 Pfam Protein kinase domain 183 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00230 508 FunFam Probable serine/threonine-protein kinase At1g01540 160 255 - -
Pumo5g00230 508 ProSiteProfiles Protein kinase domain profile. 180 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00230 508 Gene3D Phosphorylase Kinase; domain 1 164 255 - -
Pumo5g00230 508 PANTHER OS01G0323000 PROTEIN 7 477 - -
Pumo5g00230 508 CDD STKc_IRAK 186 452 - -
Pumo5g00230 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Pumo5g00230 508 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Pumo5g00230 508 Gene3D Transferase(Phosphotransferase) domain 1 256 468 - -
Pumo5g00230 508 FunFam Putative receptor-like serine/threonine-protein kinase 256 466 - -
Pumo5g00230 508 MobiDBLite consensus disorder prediction 462 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00230 Pumo-Chr5 5552169 5555476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00230 109 506 Receptor kinase-like Gene Family AT4G02010 39.078 1.31e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pumo5g00230 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00230 - - gmx:100800724 905.59