Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00225 ATGGAGGATCAGAATAAGAAGGTCCGAAAACCTTACACCATTACCAAGTCCAGAGAGAACTGGACCGACCAGGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAAATTGAAGCATTTGTAGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTCGTCCAAAGAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTTACTATATCCCAAGTTGCACGGCCATTGCAATCTTCATCTGCTTTATCTGAATCATCATACATTTATAGGCCAGACTCGTCATCTGTGCTTAGAACTCCAGTTAGCAGGGTGCCATTGCCATCTTGGGGCTATAATGTTACACCACCAGTCAGTCTTCCTCAAGTGATTAAAGATGATATGCTGTTGAGTCAACAAGTCAATCCTTTCAGTTACTGCTATAGCAGTAGTAATGAGAGCACTCCTAGGGGTTGGTCAAGTAGCAAACAGACAAATCAGAGTGATCAAGGCAAGCCAATTATAGAAGTACCTTATCTCTTCTTGGTTGCTTTATAA 624 0.4199 MEDQNKKVRKPYTITKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISQVARPLQSSSALSESSYIYRPDSSSVLRTPVSRVPLPSWGYNVTPPVSLPQVIKDDMLLSQQVNPFSYCYSSSNESTPRGWSSSKQTNQSDQGKPIIEVPYLFLVAL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00225 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 67 IPR017930 -
Pumo5g00225 207 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 65 IPR006447 GO:0003677
Pumo5g00225 207 FunFam protein REVEILLE 6 isoform X1 20 68 - -
Pumo5g00225 207 Gene3D - 20 68 - -
Pumo5g00225 207 SUPERFAMILY Homeodomain-like 12 68 IPR009057 -
Pumo5g00225 207 CDD SANT 20 63 IPR001005 -
Pumo5g00225 207 SMART sant 17 65 IPR001005 -
Pumo5g00225 207 ProSiteProfiles SANT domain profile. 16 69 IPR017884 -
Pumo5g00225 207 PANTHER SWI/SNF COMPLEX-RELATED 5 188 - -
Pumo5g00225 207 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Pumo5g00225 207 MobiDBLite consensus disorder prediction 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00225 Pumo-Chr5 5500760 5503042 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo5g00225 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00225 - - gmx:100791774 348.206