Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00220 ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCCTCAGTGTCTTCTTCTTCTTCTTCCTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAACTTCTTCTTCTTCCTGTTCTGGTTTCTCTATCTTCAAGGGTGAACAAGGAAACCAAGTTTTGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCTCAGCCTCTCTCGTTGCAGGCCTCTTCACCCTTGTCCTCACTCTCTTCCTATTCCTCTGCGGCACCCAAATCGGTTTCAACACAAGAGAAACAACAGCAGCAGCAGCAGCAGCGGAGTAAGCAGCCACATGCTGTCACCACCCCACGATCTAAAAGAAGGAAGAATCAGCTTAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCACATCCAAGGGGTTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTTATAGTGACTTACACAGCTGAGCACAACCACCCTGCCCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCACCTCAAACAGCAACCACTGAAGAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCACTTTCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAACACCACAAGGGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAACTGAGTCAACTCACTGCTCCTTCTGTTGTCACTGGAGACTGCTTCAGTGACCCCTTTTCAGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGTAGATGA 1041 0.4851 MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPETSSSSCSGFSIFKGEQGNQVLSLSAYPFEARSSIEELHELCKPFFSKSQPLSLQASSPLSSLSSYSSAAPKSVSTQEKQQQQQQQRSKQPHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPHPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEEDSDKSKSLTKPTFPATSGAEEEVPTPQGEKSESREEKEDVMDDEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00220 346 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00220 346 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00220 346 MobiDBLite consensus disorder prediction 212 290 - -
Pumo5g00220 346 MobiDBLite consensus disorder prediction 103 149 - -
Pumo5g00220 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 311 IPR044810 GO:0003700
Pumo5g00220 346 MobiDBLite consensus disorder prediction 103 132 - -
Pumo5g00220 346 FunFam WRKY transcription factor 22 141 211 - -
Pumo5g00220 346 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00220 346 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00220 346 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00220 346 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00220 Pumo-Chr5 5400398 5402503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00220 1 344 WRKY Transcription Factor Family AT4G01250 45.682 2.39e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g00220 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00220 K13425 - gmx:100798084 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00220 5 5400398 5402503 Pumo6g02512 6 58735134 58736247 ECH
Pumo5g00220 5 5400398 5402503 Pumo5g00220 5 5400398 5402503 ECH
Pumo7g00766 7 13482014 13482483 Pumo5g00220 5 5400398 5402503 ECH
Pumo7g00265 7 3112891 3118463 Pumo5g00220 5 5400398 5402503 ECH
Pumo5g00220 5 5400398 5402503 Pumo7g00766 7 13482014 13482483 PCT