Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00200 ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCCTCAGTGTCTTCTTCTTCTTCTTCCTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAGCTTCTTCTTCTTCCTCTTCTGGTTTCTCTATCTTCAAGGGTGAACAAGGAAACCAAGTTTTGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCTCAGCCTCTCTCGTTGCAGGCCTCTTCACCCTTGTCCTCACTCTCTTCCTATTCCTCTGCGGCACCCAAATCGGTTTCAACACAAGAGAAACAACAGCAGCAGCAGCAGCAGCGGAGTAAGCAGCCACATGCTGTCACCACCCCACGATCTAAAAGAAGGAAGAATCAGCTTAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGTCAGAAACCCATAAAGGGGTCTCCACATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTTATAGTGACTTACACAGCTGAGCACAACCACCCTGCCCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCACCTCAAACAGCCACCACTGAAGAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCACTTTCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAACACCACAAGGGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAACTGAGTCAACTCACTGCTCCTTCTGTTGTCACTGGAGACTGCTTCAGTGACCCCTTTTCAGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGTAGATGA 1041 0.487 MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEASSSSSSGFSIFKGEQGNQVLSLSAYPFEARSSIEELHELCKPFFSKSQPLSLQASSPLSSLSSYSSAAPKSVSTQEKQQQQQQQRSKQPHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPHPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEEDSDKSKSLTKPTFPATSGAEEEVPTPQGEKSESREEKEDVMDDEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00200 346 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00200 346 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00200 346 MobiDBLite consensus disorder prediction 103 149 - -
Pumo5g00200 346 MobiDBLite consensus disorder prediction 103 132 - -
Pumo5g00200 346 MobiDBLite consensus disorder prediction 212 289 - -
Pumo5g00200 346 FunFam WRKY transcription factor 22 141 211 - -
Pumo5g00200 346 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00200 346 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo5g00200 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 311 IPR044810 GO:0003700
Pumo5g00200 346 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo5g00200 346 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00200 Pumo-Chr5 5077212 5079317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00200 1 344 WRKY Transcription Factor Family AT4G01250 45.682 7.01e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo5g00200 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00200 K13425 - gmx:100798084 562.377