Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00191 ATGTCATCTCCCTCTCCCTCCATCTCCATCGTGTCACCCACGAGCCCCACCACCACCACGGGCAATGACCTAGACATATTCACCAAGTTATTCCTATTATTAATTTTTCTCTCTCTTTTCATTCGCGTGTGTTACGTCTATATTTCCATTCGCCGTGACCAACAAGGCAATGACAATAATAATACATTGACCCTTCATGACGATCAAAATCAAAACCACCCCACGGGGCTAGCCTTTAGCGTAATTAAGTCCTACCACACTTTCCCTTATAGCAAGACCAACAATAATATTGTGACAACAATTCACGACCACGACACCACGTGCTCCATATGCATCGAGGAGTACGAGGAATCGGAGATGCTAAGGATGATGCCCCAATGCCGCCACTACTTTCACCGAGACTGCGTTGACGTGTGGTTAAAGGTCAACGCGTCGTGTCCCGTTTGTAGAAACTCGCTCGTGGAAGCTAGGAATAATGGTGGCACTTCCTTAGAATGCGTCTAA 504 0.4663 MSSPSPSISIVSPTSPTTTTGNDLDIFTKLFLLLIFLSLFIRVCYVYISIRRDQQGNDNNNTLTLHDDQNQNHPTGLAFSVIKSYHTFPYSKTNNNIVTTIHDHDTTCSICIEEYEESEMLRMMPQCRHYFHRDCVDVWLKVNASCPVCRNSLVEARNNGGTSLECV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00191 167 PANTHER RING-H2 FINGER PROTEIN ATL67 4 155 IPR044289 GO:0016567|GO:0016740
Pumo5g00191 167 Pfam Ring finger domain 107 150 IPR001841 -
Pumo5g00191 167 SUPERFAMILY RING/U-box 99 157 - -
Pumo5g00191 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 155 IPR013083 -
Pumo5g00191 167 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Pumo5g00191 167 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00191 Pumo-Chr5 4882850 4883353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00191 24 153 C3H Transcription Factor Family AT1G04360 33.333 2.05e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00191 - - ccaj:109814695 183.341