Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00173 ATGTTGTGTGCTTGTCCAACTGAAAATCAGACAGCAAGAGGGGTCACCTCCTTGCTGGTTTACTTGGTGAACTATGGTGACACTATTAAGTCCATAGGAAGGGCTTATGATGTGGATGAACAAAGTGTGCTTGAGGCCAATAAGTTGGCAGTGCCACAAACTAAAAACAGCAGCATGGAGCTCCCTGCCTTGACACCTATTTTAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCGGATAAATTCTATTGTAGATGTTACCAAGCACCAGATGGAAGCTCCAAGGGGCCCTTCTGTGATGAATCTGATGGTCAGAAATTCCCTGCCAAATTGGTTGCTGGTTTAGGTGTTGGAATTGGTGCAGGCTTTCTGTGCTTGTTTCTTTTCGGGTACAAGTCATATCAATACATACAGAAAAAGAGAGAAAGTATCCTTAAGGAAAAGTTATTCAGGCAAAATGGTGGATACTTGTTACAAGAGAAGCTCTCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGATGCAGAAAGCAACAGATAACTACAACAGGAGCAGGTTTCTTGGTCAGGGAGGCTATGGCACAGTGTATAAAGGCATGTTACCAGATGGAACCATAGTTGCAGTTAAGAAGTCAAGAGAGATTGAAAGGAACCAGATAGATACCTTTGTCAATGAAGTAGTCATTTTATCTCAGATCAACCACAGGAACATTGTAAAACTATTAGGTTGTTGTCTTGAGATAGAAGCTCCAATACTAGTCTATGAATTCATTCCCAATGGAACACTTTCTCACCATATCCATAGGGGAGACAATGAGCCCTCCCTTCCTTGGGAAAGTCGCCTTAGTATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCAGCTTCTATTCCCATTTTCCATAGAGACATCAAACCCACCAACATACTTTTAGACAGTAACTACAATGCCAAAGTGTCTGATTTTGGAACATCAAGGTCAGTCCCACTAGATAAGACTCACTTAACCACAGCTGTGGGAGGAACTTTTGGGTACATTGACCCTGAATATTTTCAGTCTAGTCAATTATCAGATAAAAGTGATGTTTATAGTTTTGGGGTTGTGCTTGTAGAGCTCGTAAGTGGGAGAAAGCCTATTTCATTCTTAGAGGAAAATGAGGGTCAGAGTCTGATTGCACAATTCATTTCTTTGATGAAGGAGAACCAAGTTTATGAAATTTTAGATGCCTTGGTGCTCAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAGCGGAATTAGAAGCATTGAGAAAGACACAAAGTTCATTACAGATGAACCATGATCATGAGCACACAACTAGTGACATAGTTCAAGAATGCACCGAGGAAAGCATGTCACTGTCCTTACATCTAGAGTCCACATCCTTTGAGGAAGCCAGATTGAGACCCGATTCTTTTTTTTAA 1536 0.4115 MLCACPTENQTARGVTSLLVYLVNYGDTIKSIGRAYDVDEQSVLEANKLAVPQTKNSSMELPALTPILVPLIGKSCKENPDKFYCRCYQAPDGSSKGPFCDESDGQKFPAKLVAGLGVGIGAGFLCLFLFGYKSYQYIQKKRESILKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEEMQKATDNYNRSRFLGQGGYGTVYKGMLPDGTIVAVKKSREIERNQIDTFVNEVVILSQINHRNIVKLLGCCLEIEAPILVYEFIPNGTLSHHIHRGDNEPSLPWESRLSIACEVAGAVAYMHFAASIPIFHRDIKPTNILLDSNYNAKVSDFGTSRSVPLDKTHLTTAVGGTFGYIDPEYFQSSQLSDKSDVYSFGVVLVELVSGRKPISFLEENEGQSLIAQFISLMKENQVYEILDALVLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKTQSSLQMNHDHEHTTSDIVQECTEESMSLSLHLESTSFEEARLRPDSFF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00173 511 SMART serkin_6 187 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00173 511 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 76 468 IPR045274 GO:0007166
Pumo5g00173 511 CDD STKc_IRAK 193 460 - -
Pumo5g00173 511 SUPERFAMILY Protein kinase-like (PK-like) 170 457 IPR011009 -
Pumo5g00173 511 Gene3D Transferase(Phosphotransferase) domain 1 263 486 - -
Pumo5g00173 511 ProSiteProfiles Protein kinase domain profile. 187 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00173 511 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Pumo5g00173 511 FunFam Wall-associated receptor kinase 2 158 262 - -
Pumo5g00173 511 Coils Coil 450 470 - -
Pumo5g00173 511 FunFam Wall-associated receptor kinase 2 263 480 - -
Pumo5g00173 511 Gene3D Phosphorylase Kinase; domain 1 168 262 - -
Pumo5g00173 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Pumo5g00173 511 CDD LysM 20 54 IPR018392 -
Pumo5g00173 511 Pfam Protein kinase domain 187 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00173 Pumo-Chr5 4676120 4678806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00173 117 464 Receptor kinase-like Gene Family AT1G16130 57.429 6.53e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pumo5g00173 Pkinase 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00173 - - gmx:100795455 911.753