LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g00172	ATGTTCAAATTCCTGAAAGAGGTCGTTGGTGGATCTGGCACCGGCATCAAGGATCTCCCCTACACCATCGCCGAACCTTACCCTTCCGCATGGGGCTCTTGGACCCATTCTCGCGGCACCTCCAAGGATGACGGTTCTCCCGTCTCGGTGTTCTCTCTCTCCGGCTCCAATGCTCAGGATGGTCACTTAGCTGCCGCGCGCAATGGCGTGAAGCGTCTTCGAACTGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAAACTTATGATGCAGGTTCTCCTAAGGTGACGATATATATCGTGACTGAGCCTGTGATGCCGCTATCTGAGAAGATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTTCATGGTAACGTTTGCATGGCTAGTGTTGTTGTGACACCAACTTTGGACTGGAAGCTTCATGCTTTTGATGTTCTATCGGAGTTTGATGGGAGCAGCGAAATGCCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCGAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGCCTAATCTATGAGGTATTCTCTGGTCTGAGGTTGGGCAAAACAGAGGAGTTACGCAACACTGGTTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAATTTTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTGGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCTCAGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTACTTCCAACAATTGTAAAACTCTTTGCCTCCAATGATCGAGCTATTCGAGTTGGCCTTCTTCAACATATTGATCAATATGGAGAGTCTTTATCAGCACAAGTTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAATTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGGACCATGTCAGGGTCATTATTGAAGTATCTTTCAAAGTTGCAGGTTGATGAAGAACCTGCAATTAGAACAAATACTACCATATTATTAGGCAATATTGGAAGTTACTTAAATGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGGACTAAGGCATTTCAAGCTGTTGATCAGTTTTTGCAGATAGCAAAGCAACATTATGAAAAGACTAATGCAGCAGATACCACTGGTGGTGCAAGTGTGGGAAGCTCATCTGTTCCAGGAAATGCTAGTTTGCTTGGATGGGCTATGAGCTCCTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCAAGTTCGACTGCAATCACTTCAACATCTTCTAATGGCACCACAGGTATAGAGACACCATCAACAGCACCAGCCCGTGTAAGCTCTACAACAGATTTGACTGAACACCCTGTCCCTACATCTCCTACATCAACGGATGGCTGGGGGGAACTTGAGAATGGAATTGATGAGGAGCATGGAAGTGACAGGGATGGGTGGGATGATCTGGAACCACTCGAAGAGACAAAGCCAGCTCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCTGTTTCTCAACCTATTTCACATACAAAACAAGGTATTTTTTATTTGTCTGTTAGTATTTTGGTATGA	2151	0.4407	MFKFLKEVVGGSGTGIKDLPYTIAEPYPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYALGLHQIAKAVSFLNNDCKLVHGNVCMASVVVTPTLDWKLHAFDVLSEFDGSSEMPSGQMLQYAWLVGSQYKPMELAKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNTGSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEFFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAASALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQHYEKTNAADTTGGASVGSSSVPGNASLLGWAMSSLTLKGKPSDHAPVASASSTAITSTSSNGTTGIETPSTAPARVSSTTDLTEHPVPTSPTSTDGWGELENGIDEEHGSDRDGWDDLEPLEETKPAPALANIQAAQRRPVSQPISHTKQGIFYLSVSILV	716

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo5g00172	716	Gene3D	Transferase(Phosphotransferase) domain 1	109	281	-	-
Pumo5g00172	716	PANTHER	SCY1-RELATED S/T PROTEIN KINASE-LIKE	11	656	-	-
Pumo5g00172	716	MobiDBLite	consensus disorder prediction	656	675	-	-
Pumo5g00172	716	ProSiteProfiles	Protein kinase domain profile.	2	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo5g00172	716	Gene3D	-	282	561	IPR011989	-
Pumo5g00172	716	ProSiteProfiles	HEAT repeat profile.	523	561	IPR021133	-
Pumo5g00172	716	SMART	serkin_6	2	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pumo5g00172	716	SUPERFAMILY	ARM repeat	293	552	IPR016024	-
Pumo5g00172	716	MobiDBLite	consensus disorder prediction	601	652	-	-
Pumo5g00172	716	SUPERFAMILY	Protein kinase-like (PK-like)	38	287	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g00172	Pumo-Chr5	4659036	4674470	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g00172	70	322	MAP Kinase Kinase Kinase	AT5G66850	24.176	1.47e-06	49.7

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	SCY1_SCYL1	Pumo5g00172		None	None	None

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g00172	K08876		-	gmx:100782748	1307.74

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