Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00172 ATGTTCAAATTCCTGAAAGAGGTCGTTGGTGGATCTGGCACCGGCATCAAGGATCTCCCCTACACCATCGCCGAACCTTACCCTTCCGCATGGGGCTCTTGGACCCATTCTCGCGGCACCTCCAAGGATGACGGTTCTCCCGTCTCGGTGTTCTCTCTCTCCGGCTCCAATGCTCAGGATGGTCACTTAGCTGCCGCGCGCAATGGCGTGAAGCGTCTTCGAACTGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCTGAGATTGAAACTTATGATGCAGGTTCTCCTAAGGTGACGATATATATCGTGACTGAGCCTGTGATGCCGCTATCTGAGAAGATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTTCATGGTAACGTTTGCATGGCTAGTGTTGTTGTGACACCAACTTTGGACTGGAAGCTTCATGCTTTTGATGTTCTATCGGAGTTTGATGGGAGCAGCGAAATGCCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCGAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGCCTAATCTATGAGGTATTCTCTGGTCTGAGGTTGGGCAAAACAGAGGAGTTACGCAACACTGGTTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAATTTTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTGGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCTCAGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTACTTCCAACAATTGTAAAACTCTTTGCCTCCAATGATCGAGCTATTCGAGTTGGCCTTCTTCAACATATTGATCAATATGGAGAGTCTTTATCAGCACAAGTTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAATTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGGACCATGTCAGGGTCATTATTGAAGTATCTTTCAAAGTTGCAGGTTGATGAAGAACCTGCAATTAGAACAAATACTACCATATTATTAGGCAATATTGGAAGTTACTTAAATGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGGACTAAGGCATTTCAAGCTGTTGATCAGTTTTTGCAGATAGCAAAGCAACATTATGAAAAGACTAATGCAGCAGATACCACTGGTGGTGCAAGTGTGGGAAGCTCATCTGTTCCAGGAAATGCTAGTTTGCTTGGATGGGCTATGAGCTCCTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCAAGTTCGACTGCAATCACTTCAACATCTTCTAATGGCACCACAGGTATAGAGACACCATCAACAGCACCAGCCCGTGTAAGCTCTACAACAGATTTGACTGAACACCCTGTCCCTACATCTCCTACATCAACGGATGGCTGGGGGGAACTTGAGAATGGAATTGATGAGGAGCATGGAAGTGACAGGGATGGGTGGGATGATCTGGAACCACTCGAAGAGACAAAGCCAGCTCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCTGTTTCTCAACCTATTTCACATACAAAACAAGGTATTTTTTATTTGTCTGTTAGTATTTTGGTATGA 2151 0.4407 MFKFLKEVVGGSGTGIKDLPYTIAEPYPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYALGLHQIAKAVSFLNNDCKLVHGNVCMASVVVTPTLDWKLHAFDVLSEFDGSSEMPSGQMLQYAWLVGSQYKPMELAKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNTGSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEFFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAASALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQHYEKTNAADTTGGASVGSSSVPGNASLLGWAMSSLTLKGKPSDHAPVASASSTAITSTSSNGTTGIETPSTAPARVSSTTDLTEHPVPTSPTSTDGWGELENGIDEEHGSDRDGWDDLEPLEETKPAPALANIQAAQRRPVSQPISHTKQGIFYLSVSILV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00172 716 Gene3D Transferase(Phosphotransferase) domain 1 109 281 - -
Pumo5g00172 716 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 11 656 - -
Pumo5g00172 716 MobiDBLite consensus disorder prediction 656 675 - -
Pumo5g00172 716 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00172 716 Gene3D - 282 561 IPR011989 -
Pumo5g00172 716 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Pumo5g00172 716 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g00172 716 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Pumo5g00172 716 MobiDBLite consensus disorder prediction 601 652 - -
Pumo5g00172 716 SUPERFAMILY Protein kinase-like (PK-like) 38 287 IPR011009 -
Pumo5g00172 716 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Pumo5g00172 716 MobiDBLite consensus disorder prediction 594 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00172 Pumo-Chr5 4659036 4674470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00172 70 322 MAP Kinase Kinase Kinase AT5G66850 24.176 1.47e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Pumo5g00172 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00172 K08876 - gmx:100782748 1307.74