Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00171 ATGGTTTCCCTTTCAACCACCCCCTTTCTTCCCTTCACTGCACAAAACGCTTCTACTAGAATAATCCTTCCTTCCAATTCATTCTCTTACAACAAGCAACGTAGTAATAAGGATCACAGGAAGGTTGTCTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCGCCATCAATTTCAATGGTTCGTCCAAATCAGAACAATTGAGCACGGCGCGGGATCATGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTGTACAAGGCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATTAGGCATGGTGAAGCCGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATAGCAGGGCTTCTTGCTCCAGACAAGGGGGAAGTTTATATTCGAGGCAAAAAGAGAGTTGGTTTAGTAAGTGACGATGACATATCTGGCCTTCGGATTGGATTAGTAAGTTTCAGAGTAATTATGCTAATTCTTAGATGCTATTACACTTTCATTTGTAATCTTGTTTTTTTAATCTGTAAACAGGTTTTCCAAAGTGCTGCCCTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGACCAGATATCAGAGCTTGTCACAGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAGGATCGGTTGCCTTCTGAGCTATCAGGAGGGATGAAAAAGCGAGTTGCTTTAGCTCGTTCTATTATTTGTGACACCACAAAAGAATCAATAGAACCAGAGGTGCTCTTGTATGATGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCTGTGCACATAAAAGGACGAGATGCACGTGGAAAACCTGGAAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTATTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACCCATGAATTTACAACTTCAATGAATCCAATTGTTCAGCAGTTTGCATCCGGGAGCCTAGATGGTCCTATCAGATATTAG 1122 0.4162 MVSLSTTPFLPFTAQNASTRIILPSNSFSYNKQRSNKDHRKVVCACIAPPQNFKSQDSSAINFNGSSKSEQLSTARDHEDDSDVLIECRDVYKAFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVSFRVIMLILRCYYTFICNLVFLICKQVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISELVTETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSMNPIVQQFASGSLDGPIRY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00171 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 360 IPR027417 -
Pumo5g00171 373 Pfam ABC transporter 193 283 IPR003439 GO:0005524
Pumo5g00171 373 ProSitePatterns ABC transporters family signature. 248 262 IPR017871 GO:0005524|GO:0016887
Pumo5g00171 373 Pfam ABC transporter 101 148 IPR003439 GO:0005524
Pumo5g00171 373 Gene3D - 72 364 IPR027417 -
Pumo5g00171 373 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 11 373 - -
Pumo5g00171 373 SMART AAA_5 110 341 IPR003593 GO:0016887
Pumo5g00171 373 CDD ABC_Org_Solvent_Resistant 86 362 - -
Pumo5g00171 373 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 86 364 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00171 Pumo-Chr5 4647740 4652744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00171 85 342 Calmodulin-binding Proteins AT2G36910 25.926 6.04e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00171 - - gmx:100789283 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00171 5 4647740 4652744 Pumo5g00171 5 4647740 4652744 ECH