Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00165 ATGGAATTCGATGCCGCGATTCCCGTGTCCCGAGAGCACCTCCCTCAAGATGCAATGTGGCAAATCAACTTGAGGTCAAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATAAGGACTGGCCTATGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCACCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGCTGCCTTGAATATTTTAGGCTATCCACTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAGCAATATGGTGCTTTCCATGCGAAGTTCTCCAGTTTATCCTACTGTCCAGTCTCCAACTACACCAGGTCAGCAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCGTTTATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCACCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCCTACAGTGGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTCGGCAAAGTGAACCAGCAAATTCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAGCCTGAATGTCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCGGTCTGTCGTTTCCACCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGTCTTCCTTTACGTCCTGGAGAGCCCCTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCTTCGCCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGACGGCGTATGTTAGGTTCTTCATCGGGAACTTCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGACGATAACATTGATGAAGAGGGATAA 1278 0.4577 MEFDAAIPVSREHLPQDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRAALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVQSPTTPGQQSYATGITNWSSSSFIPSPRWQGPSSYAPLILPQGMVSVPGWSAYSGQMGSDSPQQTMGNGQSYGTRQSEPANSGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFAYNISASPSADAPGRRMLGSSSGTSALNLSSEGLVESGSANPRRLSLSETRQIPSGDDNIDEEG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00165 425 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Pumo5g00165 425 FunFam CCCH type zinc finger protein 283 369 - -
Pumo5g00165 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 312 IPR000571 GO:0046872
Pumo5g00165 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Pumo5g00165 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Pumo5g00165 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 358 IPR000571 GO:0046872
Pumo5g00165 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Pumo5g00165 425 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Pumo5g00165 425 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Pumo5g00165 425 Gene3D - 114 163 - -
Pumo5g00165 425 MobiDBLite consensus disorder prediction 390 425 - -
Pumo5g00165 425 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Pumo5g00165 425 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Pumo5g00165 425 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Pumo5g00165 425 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Pumo5g00165 425 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Pumo5g00165 425 MobiDBLite consensus disorder prediction 390 415 - -
Pumo5g00165 425 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Pumo5g00165 425 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Pumo5g00165 425 SUPERFAMILY CCCH zinc finger 288 314 IPR036855 GO:0046872
Pumo5g00165 425 PANTHER PROTEIN PHOSPHATASE RELATED 26 378 - -
Pumo5g00165 425 Gene3D - 277 360 - -
Pumo5g00165 425 MobiDBLite consensus disorder prediction 228 262 - -
Pumo5g00165 425 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Pumo5g00165 425 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Pumo5g00165 425 SUPERFAMILY CCCH zinc finger 334 358 IPR036855 GO:0046872
Pumo5g00165 425 Gene3D - 36 113 - -
Pumo5g00165 425 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Pumo5g00165 425 FunFam Zinc finger nuclease 2 37 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00165 Pumo-Chr5 4563795 4571479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00165 19 422 C2H2 Transcription Factor Family AT3G02830 61.614 7.22e-177 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo5g00165 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00165 - - gmx:100786261 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00165 5 4563795 4571479 Pumo5g00165 5 4563795 4571479 ECH