Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00160 ATGGGAATGATAGTGGAGTTTGAAAATGAAAACGGAGACCAAAACGACGCCGTTTTGGTTCCGCCCGCTAACTTCGCCATGGTCGAGGACTGCATTTTCCGATCCAGCTTCCCGACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCATATACTTGTGCCCTGAGCCTTATCCGGAAGAAAATCTAGAGTTCCTTCGCTCGCAGAATATTCGCCTCTTTCAATTTGGAATTGAGGGGAAAACGGACGTTTCTATGCCTATTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATTGATGTGAGAAATCACCCTGTTTTGATCCATTGCAAGCGAGGAAAGCATAGAACCGGTTGCCTTGTTGGTTGCTTGCGAAAATTACAGAACTGGTGTTTGTCCTCTGTGTTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCCAGGCCAACAGATTTATCATTCATAGAAATGTTTGATATACTAAGCCTGAGTAAGTGCCTTTACAGCATCATCTACCAGTACCATGGATATGGTTCAAAGAAGCGCAGGTTGATGTATAAGGATGAGAATTTACAGAAGCCCCGACTGACATCATTTTAG 618 0.4385 MGMIVEFENENGDQNDAVLVPPANFAMVEDCIFRSSFPTPSNFPFLQTLNLRSIIYLCPEPYPEENLEFLRSQNIRLFQFGIEGKTDVSMPILKDSIMDALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRPTDLSFIEMFDILSLSKCLYSIIYQYHGYGSKKRRLMYKDENLQKPRLTSF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00160 205 ProSitePatterns Tyrosine specific protein phosphatases active site. 114 124 IPR016130 GO:0016311|GO:0016791
Pumo5g00160 205 ProSiteProfiles Dual specificity protein phosphatase domain profile. 24 173 IPR020422 GO:0006470|GO:0008138
Pumo5g00160 205 Gene3D Protein tyrosine phosphatase superfamily 18 168 IPR029021 -
Pumo5g00160 205 Pfam Tyrosine phosphatase family 19 167 IPR004861 -
Pumo5g00160 205 CDD PFA-DSP_Siw14 19 165 - -
Pumo5g00160 205 PANTHER TYROSINE-PROTEIN PHOSPHATASE 15 172 - -
Pumo5g00160 205 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 166 IPR029021 -
Pumo5g00160 205 FunFam probable tyrosine-protein phosphatase At1g05000 18 168 - -
Pumo5g00160 205 PRINTS Plant and fungal dual specificity phosphatase signature 75 89 IPR020428 GO:0016791
Pumo5g00160 205 PRINTS Plant and fungal dual specificity phosphatase signature 92 106 IPR020428 GO:0016791
Pumo5g00160 205 PRINTS Plant and fungal dual specificity phosphatase signature 56 69 IPR020428 GO:0016791
Pumo5g00160 205 PRINTS Plant and fungal dual specificity phosphatase signature 19 36 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00160 Pumo-Chr5 4523913 4526266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00160 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.154 9.71e-106 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00160 K18045 - gmx:100787713 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00160 5 4523913 4526266 Pumo5g00160 5 4523913 4526266 ECH