Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00150 ATGGCCATGGAAAATCAAAATTTACTAAAGTATTGGGGTATGTCACTACTCTGCATGCTTTTTTTGGGTCATTGGATCTCTGTTGAAGCTGCCCCTGCACAATCTCTCATCACACAACTCCCTGGCTTTAACGGCAATTTCCCATCCAAGCACTATTCCGGATATATAAGTATTGATGGAAATGCTGAGAGTGGGAAGAACCTGTTCTACTACTTCGTTAGTTCAGAGAGAAGTCCAGAGAAGGACCCAGTTGTGCTATGGCTGAATGGTGGACCTGGGTGTTCCAGCTTTGATGGCTTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAATTCAAAAGGGAATCTACGGTATCTACCCACTTTGCATATCAATCCTTACAGCTGGTCCAAGGTTTCCAACATTATATATTTGGATTCCCCCGCTGGTGTTGGCCTCTCTTACTCCAAGAACACAAGCAAATATGCTACTGGGGACCTAGAAACTGCGTTTGATACCCATGCTTTCCTCTTAAAGTGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGGGAGTCTTATGCTGGAGTTTATGTGCCTACTCTAGCTTTTGAAGTTGCTAAAGGAATCCGGAGTCGTAGAAATCCCGTGATCAATTTTAAGGGTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGAATTTACAAGCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATAATGTGTGTTATAAGACCATTGCAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAATATACTAGAGCCATGTTACCATTTCCCTGATGCTGCCACAGCCAAAGACAATGGAAGCTTACCAATGAGTTTTAAACAATTAGGGGTTACTGAGAAGCCTCTCCCAGTGAGGAAGAGAATGTTTGGTAGAGCTTGGCCTTTTCGAGCACCAGTCAAACCTGGCCTTGTTACATTATGGCCCCAATTGACACAAACGAGACATGTCGCCTGTGTTAATGATGAAGTAGCAAGTTCATGGCTAAACAACGATGCAGTTAGAAAAGCCATTCATGCTGAGTCGGAAAAAGTGGCGGGTGCGTGGGAATTATGTACGAGTAGGATAGAGTACCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCAGGCTTGGTTATAAGGCACTTATTTTCAGTGGCGACCATGATATGTGTGTACCATATACCGGAAGTGAGGCTTGGACACGATCTTTGGGATATAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGTTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAGCCACGGGAAGCGTTGGATTTTTATAGCCGTTGGTTGGAGGGAAAGCCAATATAA 1530 0.4412 MAMENQNLLKYWGMSLLCMLFLGHWISVEAAPAQSLITQLPGFNGNFPSKHYSGYISIDGNAESGKNLFYYFVSSERSPEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAANSKGNLRYLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYATGDLETAFDTHAFLLKWFQQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGIRSRRNPVINFKGYMVGNGVTDEIFDGNALIPFVHGMGLISDSIYENLQASCKGNYYDAYSLDENNVCYKTIAKVDRAIDGLNVYNILEPCYHFPDAATAKDNGSLPMSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKPGLVTLWPQLTQTRHVACVNDEVASSWLNNDAVRKAIHAESEKVAGAWELCTSRIEYHHNAGSMIPYHKNLTRLGYKALIFSGDHDMCVPYTGSEAWTRSLGYKIVDEWRPWNSNNQVAGYLQAYENNLTFLTIKGAGHTVPEYKPREALDFYSRWLEGKPI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00150 509 FunFam Carboxypeptidase 411 506 - -
Pumo5g00150 509 SUPERFAMILY alpha/beta-Hydrolases 37 508 IPR029058 -
Pumo5g00150 509 Gene3D alpha/beta hydrolase 29 328 IPR029058 -
Pumo5g00150 509 ProSitePatterns Serine carboxypeptidases, serine active site. 189 196 IPR018202 GO:0004185
Pumo5g00150 509 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 493 IPR001563 GO:0004185|GO:0006508
Pumo5g00150 509 ProSitePatterns Serine carboxypeptidases, histidine active site. 476 493 IPR033124 GO:0004185
Pumo5g00150 509 FunFam Carboxypeptidase 364 508 - -
Pumo5g00150 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Pumo5g00150 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Pumo5g00150 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 476 489 IPR001563 GO:0004185|GO:0006508
Pumo5g00150 509 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Pumo5g00150 509 Gene3D - 362 509 - -
Pumo5g00150 509 FunFam Carboxypeptidase 30 322 - -
Pumo5g00150 509 Pfam Serine carboxypeptidase 41 506 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00150 Pumo-Chr5 4404691 4413766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00150 370 509 Calmodulin-binding Proteins AT2G22960 48.571 2.69e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00150 K16296 - gmx:100790895 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00150 5 4404691 4413766 Pumo5g00150 5 4404691 4413766 ECH
Pumo5g00150 5 4404691 4413766 Pumo7g00743 7 12435390 12437655 PCT