Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00132 ATGGGGTCTATGAATTTGTTGGGTTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAAACAGCACCTTCTCGTTTTGGCTTCAACCCTGATGGAATCTCAAGCACTGATGTAGCAGGAGACTGCTTTGATCTCACTTCTGACTCAACTCCTCATTTACTCAACCTTCCTTCTTATGGCATATACGAAGCTTTTCACAGAAACAATAATATTCACACCACTCAAGATTGGAAGGAGAACTACAACAGCCAAAACTTGCTATTGGGAAGTTCATGCAGCAACCAAAACATGAACCACGACCAACAGCAACAACAACAACAGCCAAAGCTTGAAAACTTCCTCGGTGGACACTCATTTGGTGAACATGAGCAAACCTACGGTGGTAACTCAGCCTCTACAGGTTACATGTTTCCGGCTCAGCCGGTATCGGCTGGTGGAAGTAGCGGTGGCGGCGGTGGTGGTAGCAATACCAGCAACAACAGTAACTCCATAGGGTTATCCATGATAAAGACATGGTTGAGGAACCAACCACCACACTCAGAAAGCAACAACAACAACAATGAAAGTGGTGGCAATAGTAGAAGCAGTGTGCAGACTCTATCACTTTCCATGAGTACTGGTTCACAATCAAGCACATCACTGCCCCTTCTCACTGCTAGTGTGGATAATGGAGAGAGTTCTTCTGAGAACAAACAACCACACACCACGGCTGCACTTGATACAACCCAAACCGGAGCCATTGAAACTGCACCCAGAAAGTCCATTGACACGTTTGGACAGAGAACTTCTATCTACCGTGGTGTAACAAGGCATAGGTGGACGGGGAGGTATGAGGCTCACCTGTGGGACAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGGTGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCGATTAGCCACTATGAGAAAGAGTTGGAAGAAATGAAGCACATGACTAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGACACCATCAACATGGTAGATGGCAAGCGAGGATTGGAAGAGTTGCAGGCAACAAGGATCTCTACTTGGGAACTTTCAGCACCCAAGAGGAGGCAGCAGAAGCATATGATGTTGCAGCAATCAAATTCCGAGGACTAAGTGCTGTCACAAACTTTGACATGAGCAGATATGACGTGAAAAGCATACTTGAGAGCACCACTTTGCCAATTGGTGGTGCTGCAAAGCGTTTGAAGGATATGGAGCAGGTGGAACTGAGTGTGGATGGCCATAGAGCAGATCAAGAAGATCATAGCAGCATCATGAGCTCTCACCTAACTCAAGGAATCAATAACAACTATGCAGCAGGAGGAACAACAACTCATCATAACTGGCATAATGCTCTTGCATTCCACCAACCTCAACCTTGCACCACCATACACTACCCTTATGGACAAAGACTATGGTGCAAGCAAGAACAACAAGACAATTCTGATGTCTCTCACTCTTTGTCTTATCCTGATATTCATCAACTACAGCTAGGGAATAATGGCACACATAACTTCTTTCACTCAAATTCAGGGTTGCACCCTATGTTGAGCATGGATTCTGCTTCCATTGACAATAGCTCTTCATCTAACTCAATTGTTTATGATGTTTATGGAGGTGGTGGGGGCTATGTGATGCCTATGGGGACCACTACTGTTGTTGCAAGTGATGCTGATCAAAATCCAAGAAGCAATAATGGTTTTGGTGATAGTGAGATAAAGGCACTTGGTTATGAAAGTGTGTATGGCTCTACAACTGATCCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCTCAACAGCAATCATCTTCTGTGGTGGATGCAGTGAAGGCTAGTACATATGATCAAGGATCTGCATGCAACAATTGGGTTCCAACTGCTATTCCAACCCATGCACCAAGGTCTACTAGTATGGCTTTTTGCCATGGTGCACCACCCTTCTCATTATTGCATGAATAG 2106 0.4468 MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFGFNPDGISSTDVAGDCFDLTSDSTPHLLNLPSYGIYEAFHRNNNIHTTQDWKENYNSQNLLLGSSCSNQNMNHDQQQQQQQPKLENFLGGHSFGEHEQTYGGNSASTGYMFPAQPVSAGGSSGGGGGGSNTSNNSNSIGLSMIKTWLRNQPPHSESNNNNNESGGNSRSSVQTLSLSMSTGSQSSTSLPLLTASVDNGESSSENKQPHTTAALDTTQTGAIETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELSVDGHRADQEDHSSIMSSHLTQGINNNYAAGGTTTHHNWHNALAFHQPQPCTTIHYPYGQRLWCKQEQQDNSDVSHSLSYPDIHQLQLGNNGTHNFFHSNSGLHPMLSMDSASIDNSSSSNSIVYDVYGGGGGYVMPMGTTTVVASDADQNPRSNNGFGDSEIKALGYESVYGSTTDPYHAHARNLYYLSQQQSSSVVDAVKASTYDQGSACNNWVPTAIPTHAPRSTSMAFCHGAPPFSLLHE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00132 701 MobiDBLite consensus disorder prediction 153 255 - -
Pumo5g00132 701 SMART rav1_2 268 337 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 SMART rav1_2 367 431 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 FunFam AP2-like ethylene-responsive transcription factor ANT 267 333 - -
Pumo5g00132 701 FunFam AP2-like ethylene-responsive transcription factor 366 427 - -
Pumo5g00132 701 PRINTS Ethylene responsive element binding protein signature 407 427 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 SUPERFAMILY DNA-binding domain 267 333 IPR016177 GO:0003677
Pumo5g00132 701 ProSiteProfiles AP2/ERF domain profile. 268 331 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 Gene3D AP2/ERF domain 367 427 IPR036955 GO:0003700|GO:0006355
Pumo5g00132 701 Gene3D AP2/ERF domain 268 333 IPR036955 GO:0003700|GO:0006355
Pumo5g00132 701 MobiDBLite consensus disorder prediction 127 141 - -
Pumo5g00132 701 CDD AP2 366 427 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 SUPERFAMILY DNA-binding domain 366 427 IPR016177 GO:0003677
Pumo5g00132 701 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 523 - -
Pumo5g00132 701 ProSiteProfiles AP2/ERF domain profile. 367 425 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 MobiDBLite consensus disorder prediction 117 255 - -
Pumo5g00132 701 CDD AP2 267 333 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 MobiDBLite consensus disorder prediction 1 35 - -
Pumo5g00132 701 Pfam AP2 domain 268 323 IPR001471 GO:0003700|GO:0006355
Pumo5g00132 701 Pfam AP2 domain 367 417 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00132 Pumo-Chr5 4256905 4261191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00132 167 599 AP2-EREBP Transcription Factor Family AT5G17430 53.725 4.55e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pumo5g00132 AP2 3.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00132 K09285 - gmx:100797584 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00132 5 4256905 4261191 Pumo5g00132 5 4256905 4261191 ECH