Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00120 ATGGAGGATTCATTGGAGAATTGGATTTCTCATTTGGAAATGGAAGAATATGATGTGCTGAATGAAAGTCATGGCTCATTTGATGAGCAAGAGTTCCTAAGAGAGATCCTTGAGGAGCCAGAAAATTTGTCACCTCAAAGAGAAAACCTCTCCACAATCCAAGGTGGTGGTGGTGGTGGTGGTGGTGCCACCAGCCCCACCAACAGCACTGTGTCCTTTGATGAGTCCATTAGCTTTTGTGGGACTGGCACCACCCTCCACAAAAGCAACAGCTCCAACTCCATCAAGTCTTTGAAAAGATCATCAAGTGCCTCTCCAGCCACCACCACCACCACATACCTTCTGTCTTTTGATACCTCAACTGCTGAACCAATCACACATAAACCACCTTCCCCAGAGCTTGATTTGGCACTGGGATCATCCAAAAAAAGGAGTAGTGTTGTAACTGTGGTGGAAGATGGGTCTGAATTTGAAGCATTGACGTCCCAAAAAAAGAAGGTTAGAAGGTCATGTGAGACACAGCATCACATTATTGCTGAGAGAAAAAGGAGACAGGAACTGACAAGGAGCATCATAGCACTTTCAGCAACTATTCCTGGCCTCAAGAAGATGGACAAGGCTTATGTGCTTAGTGAAGCTGTCAATTACACAAAACAACTTCAAGAGCGAGTTAAAGAGTTGGAAAATCAAAACAAAGTAGATTCAGCAACATTCATAAGGAAATCTCAAGCCTCCTCAAATAAAAGCACCTACAATTGTGAAACGAACAAAGAATCACTATTTGAGGTTGAAGCAAGAGTCCTAGATGAGGAAGTACTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTGTTCAAAATACATGCCATGCTTGAAAAGCTTCATCTTTCCACAACCAGTAGCAGTGTATTGCCATTTGGGACTTCTTCTCTCATAGTCAACATTATTGCTCAGATGAATGGCGAATACAGCATGACCATGGATGACCTAGTGAAAAAACTGAGAGAATATCTGTTGGAGGTGTATGACATGCAATAG 1041 0.4256 MEDSLENWISHLEMEEYDVLNESHGSFDEQEFLREILEEPENLSPQRENLSTIQGGGGGGGGATSPTNSTVSFDESISFCGTGTTLHKSNSSNSIKSLKRSSSASPATTTTTYLLSFDTSTAEPITHKPPSPELDLALGSSKKRSSVVTVVEDGSEFEALTSQKKKVRRSCETQHHIIAERKRRQELTRSIIALSATIPGLKKMDKAYVLSEAVNYTKQLQERVKELENQNKVDSATFIRKSQASSNKSTYNCETNKESLFEVEARVLDEEVLIGIHCEKQKDIVFKIHAMLEKLHLSTTSSSVLPFGTSSLIVNIIAQMNGEYSMTMDDLVKKLREYLLEVYDMQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00120 346 SMART finulus 177 226 IPR011598 GO:0046983
Pumo5g00120 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 233 IPR036638 GO:0046983
Pumo5g00120 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Pumo5g00120 346 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Pumo5g00120 346 PANTHER BHLH TRANSCRIPTION FACTOR 70 339 - -
Pumo5g00120 346 MobiDBLite consensus disorder prediction 41 70 - -
Pumo5g00120 346 Coils Coil 210 237 - -
Pumo5g00120 346 Gene3D - 160 234 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00120 Pumo-Chr5 3993566 3996393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00120 168 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.066 1.39e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g00120 HLH 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00120 - - gmx:100818334 470.314