Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00119 ATGGAGGATTCATGGATGGACTTGGTTTCTCAATGGGAAATGGGTGATGATGATTTGTTCAATCAAAGTCACATGATCTCTTTCAATGAAGAAAAGCCCCTCAAAGACATGATTGTTCAGCAACAAGTTTTCTCTCCCAAAAGTAAACCCTCTTCTTCTTCCCTTCATAGCAACTTGAAACCTTGCTCATCATTTCCAACGGGTGGTTACGTTTTGTCTTTTGATAAACCTGTTGTTGAACCACTTTACCCTCAACAACATCACTTTGCTGAAAGCATGGTACAAAGCCATTGCGTTGAACCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCTGAGAGAAAAAGGAGGGAGGAATTGACTAAGAGCATCGTAGCACTTTCAGCCACCATTCCTGGGTTAAAGAAGACAGATAAGGCCAATGTAGTGCGTGAAGCTGTCGATTATGTGAAACAACTTCAAGAACGTGTGAAGGAGCTAGAAAATCAAAAGAGAAAAGCATGTGTGAATTCAATAATACTCACCAACAAGAAAACGCTGCAATTCATAAATGATCAAGCCACTCATGATGGATGTGGGGAAGAACTCCAAGAGGTGAAAGTAACTGTTTTAGATAAGGAAGTACTCATTGAAATCCATAGTGAGAAACAAAAGCAGGGTTTGCTCAAAATATTGTCATGGCTTAATAATCTCCATCTTTCTATAACGCGTACCAGCGTATTGCCATTTGGAACTTCCACTCTTCAAATTACCATTATTGCTCAGATGGATGACGAATATAACATGACAATTGATGATCTAGTAAAAACACTGCGACAGCGCATATTGAGTTTGAAGTCACAGGACATGCAAAAGTGA 867 0.4014 MEDSWMDLVSQWEMGDDDLFNQSHMISFNEEKPLKDMIVQQQVFSPKSKPSSSSLHSNLKPCSSFPTGGYVLSFDKPVVEPLYPQQHHFAESMVQSHCVEPKAFPRTRPRVHILAERKRREELTKSIVALSATIPGLKKTDKANVVREAVDYVKQLQERVKELENQKRKACVNSIILTNKKTLQFINDQATHDGCGEELQEVKVTVLDKEVLIEIHSEKQKQGLLKILSWLNNLHLSITRTSVLPFGTSTLQITIIAQMDDEYNMTIDDLVKTLRQRILSLKSQDMQK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00119 288 Gene3D - 106 175 IPR036638 GO:0046983
Pumo5g00119 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 156 IPR011598 GO:0046983
Pumo5g00119 288 SMART finulus 113 162 IPR011598 GO:0046983
Pumo5g00119 288 Coils Coil 146 173 - -
Pumo5g00119 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 169 IPR036638 GO:0046983
Pumo5g00119 288 PANTHER BHLH TRANSCRIPTION FACTOR 18 279 - -
Pumo5g00119 288 Pfam Helix-loop-helix DNA-binding domain 111 157 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00119 Pumo-Chr5 3988713 3992249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00119 112 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.235 6.83e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g00119 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00119 - - gmx:100808355 395.971